研究者業績

野村 健

ノムラ タケシ  (Takeshi Nomura)

基本情報

所属
兵庫県立大学 環境人間学部 准教授
学位
博士(医学)(2002年3月 名古屋大学)
修士(体育学)(1998年3月 福岡大学)

研究者番号
10706790
ORCID ID
 https://orcid.org/0000-0001-8955-3426
J-GLOBAL ID
201801015022519196
researchmap会員ID
B000336005

論文

 34
  • Yasuyuki Sawada, Takeshi Nomura, Boris Martinac, Masahiro Sokabe
    Frontiers in chemistry 11 1175443-1175443 2023年6月6日  査読有り筆頭著者
    The bacterial mechanosensitive channel of large conductance MscL is activated exclusively by increased tension in the membrane bilayer. Despite many proposed models for MscL opening, its precise mechano-gating mechanism, particularly how the received force at the tension sensor transmits to the gate remains incomplete. Previous studies have shown that along with amphipathic N-terminus located near the cytoplasmic surface of the membrane, Phe78 residue near the outer surface also acts as a "tension sensor," while Gly22 is a central constituent of the "hydrophobic gate." Present study focused on elucidating the force transmission mechanism from the sensor Phe78 in the outer transmembrane helix (TM2) to the gate in the inner transmembrane helix (TM1) of MscL by applying the patch clamp and molecular dynamics (MD) simulations to the wild type MscL channel and its single mutants at the sensor (F78N), the gate (G22N) and their combination (G22N/F78N) double mutant. F78N MscL resulted in a severe loss-of-function, while G22N MscL caused a gain-of-function channel exhibiting spontaneous openings at the resting membrane tension. We initially speculated that the spontaneous opening in G22N mutant might occur without tension acting on Phe78 residue. To test this hypothesis, we examined the (G22N/F78N) double mutant, which unexpectedly exhibited neither spontaneous activity nor activity by a relatively high membrane tension. To understand the underlying mechanism, we conducted MD simulations and analyzed the force transduction pathway. Results showed that the mutation at the tension sensor (F78N) in TM2 caused decreased interaction of this residue not only with lipids, but also with a group of amino acids (Ile32-Leu36-Ile40) in the neighboring TM1 helix, which resulted in an inefficient force transmission to the gate-constituting amino acids on TM1. This change also induced a slight tilting of TM1 towards the membrane plane and decreased the size of the channel pore at the gate, which seems to be the major mechanism for the inhibition of spontaneous opening of the double mutant channel. More importantly, the newly identified interaction between the TM2 (Phe78) and adjacent TM1 (Ile32-Leu36-Ile40) helices seems to be an essential force transmitting mechanism for the stretch-dependent activation of MscL given that substitution of any one of these four amino acids with Asn resulted in severe loss-of-function MscL as reported in our previous work.
  • Ibrahim M Almanjahie, Ramzan Nazim Khan, Robin K Milne, Takeshi Nomura, Boris Martinac
    European biophysics journal : EBJ 48(4) 383-393 2019年5月  査読有り
    Ion channel data recorded using the patch clamp technique are low-pass filtered to remove high-frequency noise. Almanjahie et al. (Eur Biophys J 44:545-556, 2015) based statistical analysis of such data on a hidden Markov model (HMM) with a moving average adjustment for the filter but without correlated noise, and used the EM algorithm for parameter estimation. In this paper, we extend their model to include correlated noise, using signal processing methods and deconvolution to pre-whiten the noise. The resulting data can be modelled as a standard HMM and parameter estimates are again obtained using the EM algorithm. We evaluate this approach using simulated data and also apply it to real data obtained from the mechanosensitive channel of large conductance (MscL) in Escherichia coli. Estimates of mean conductances are comparable to literature values. The key advantages of this method are that it is much simpler and computationally considerably more efficient than currently used HMM methods that include filtering and correlated noise.
  • Toshihiro Masuda, Kentarou Baba, Takeshi Nomura, Kazuya Tsujita, Tomo Murayama, Toshiki Itoh, Tomoka Takatani-Nakase, Masahiro Sokabe, Naoyuki Inagaki, Shiroh Futaki
    Communications biology 2 243-243 2019年  査読有り
    Tension in cell membranes is closely related to various cellular events, including cell movement and morphogenesis. Therefore, modulation of membrane tension can be a new approach for manipulating cellular events. Here, we show that an amphipathic peptide derived from the influenza M2 protein (M2[45-62]) yields lamellipodia at multiple sites in the cell. Effect of M2[45-62] on cell membrane tension was evaluated by optical tweezer. The membrane tension sensor protein FBP17 was involved in M2[45-62]-driven lamellipodium formation. Lysine-to-arginine substitution in M2[45-62] further enhanced its activity of lamellipodium formation. M2[45-62] had an ability to reduce cell motility, evaluated by scratch wound migration and transwell migration assays. An increase in neurite outgrowth was also observed after treatment with M2[45-62]. The above results suggest the potential of M2[45-62] to modulate cell movement and morphology by modulating cell membrane tension.
  • Navid Bavi, Adam D. Martinac, D. Marien Cortes, Omid Bavi, Pietro Ridone, Takeshi Nomura, Adam P. Hill, Boris Martinac, Eduardo Perozo
    SCIENTIFIC REPORTS 7(1) 17229-17229 2017年12月  査読有り
  • Takeshi Nomura, Akiyuki Taruno, Makoto Shiraishi, Takashi Nakahari, Toshio Inui, Masahiro Sokabe, Douglas C. Eaton, Yoshinori Marunaka
    SCIENTIFIC REPORTS 7(1) 10512-10512 2017年9月  査読有り筆頭著者

MISC

 36

書籍等出版物

 4

主要な講演・口頭発表等

 37

担当経験のある科目(授業)

 24

所属学協会

 3

共同研究・競争的資金等の研究課題

 5

社会貢献活動

 1