研究者業績

ラシド イサム

Essam Rashed

基本情報

所属
兵庫県立大学 大学院情報科学研究科 教授
学位
博士(工学)(筑波大学)

研究者番号
60837590
ORCID ID
 https://orcid.org/0000-0001-6571-9807
J-GLOBAL ID
202101013772964054
Researcher ID
F-4320-2012
researchmap会員ID
R000022998

外部リンク

論文

 99
  • Yalda Zafari-Ghadim, Essam A. Rashed, Amr Mohamed, Mohamed Mabrok
    Artificial Intelligence Review 57 307 2024年9月  査読有り
  • Walayat Hussain, Mohamed Mabrok, Honghao Gao, Fethi A. Rabhi, Essam A. Rashed
    DIGITAL HEALTH 10 2024年5月  査読有り筆頭著者最終著者責任著者
    The development of artificial intelligence (AI) has revolutionised the medical system, empowering healthcare professionals to analyse complex nonlinear big data and identify hidden patterns, facilitating well-informed decisions. Over the last decade, there has been a notable trend of research in AI, machine learning (ML), and their associated algorithms in health and medical systems. These approaches have transformed the healthcare system, enhancing efficiency, accuracy, personalised treatment, and decision-making. Recognising the importance and growing trend of research in the topic area, this paper presents a bibliometric analysis of AI in health and medical systems. The paper utilises the Web of Science (WoS) Core Collection database, considering documents published in the topic area for the last four decades. A total of 64,063 papers were identified from 1983 to 2022. The paper evaluates the bibliometric data from various perspectives, such as annual papers published, annual citations, highly cited papers, and most productive institutions, and countries. The paper visualises the relationship among various scientific actors by presenting bibliographic coupling and co-occurrences of the author's keywords. The analysis indicates that the field began its significant growth in the late 1970s and early 1980s, with significant growth since 2019. The most influential institutions are in the USA and China. The study also reveals that the scientific community's top keywords include ‘ML’, ‘Deep Learning’, and ‘Artificial Intelligence’.
  • Essam A. rashed
    The 63rd Annual Conference of Japanese Society for Medical and Biological Engineering, Kagoshima, Japan 23-25 May 2024 2024年5月  招待有り責任著者
  • H. Seshimo, M. al-Shatouri, E. A. Rashed
    The 63rd Annual Conference of Japanese Society for Medical and Biological Engineering, Kagoshima, Japan 23-25 May 2024 2024年5月  最終著者
  • M. Nouman, M. Mabrok, E. A. Rashed
    The 63rd Annual Conference of Japanese Society for Medical and Biological Engineering, Kagoshima, Japan 23-25 May 2024 2024年5月  最終著者
  • A. Soliman, Y. Zafari-Ghadim, E. A. Rashed, M. Mabrok
    The 9th International Conference on Multimedia and Image Processing (ICMIP 2024), 20~22 Apr., Osaka, Japan 2024年4月  査読有り
  • A. T. Salah, G. Khoriba, E. A. Rashed
    The 9th International Conference on Multimedia and Image Processing (ICMIP 2024), 20~22 Apr., Osaka, Japan 2024年4月  査読有り最終著者
  • M. Nouman, M. Mabrok, E. A. Rashed
    The 9th International Conference on Multimedia and Image Processing (ICMIP 2024), 20~22 Apr., Osaka, Japan 2024年4月  査読有り最終著者
  • Kiyoto Sanjo, Kazuki Hebiguchi, Cheng Tang, Essam Rashed, Sachiko Kodera, Hiroyoshi Togo, Akimasa Hirata
    Biosensors 14(3) 153 2024年3月21日  査読有り
  • A. Hirata, S. Kodera, E. A. Rashed, M. Tamura, H. Hontani
    IEICE General Conference, Hiroshima, Japan 4-8 Mar. 2024年3月  
  • Akimasa Hirata, Masamune Niitsu, Chun Ren Phang, Sachiko Kodera, Tetsuo Kida, Essam A Rashed, Masaki Fukunaga, Norihiro Sadato, Toshiaki Wasaka
    Physics in Medicine & Biology 69(5) 55013 2024年2月22日  査読有り
  • Noha A. Aboelenin, Ahmed Elserafi, Noha Zaki, Essam A. Rashed, Mohammad al-Shatouri
    Egyptian Journal of Radiology and Nuclear Medicine 54(1) 2023年4月21日  査読有り
    Abstract Background Lung cancer is one of the most common causes of cancer-related deaths in developed and developing countries. Therefore, early detection of lung cancer has a significant impact on lung cancer surveillance. Interpretation of lung CT scans for cancer screening is considered an intensive task for most radiologists, and long experience is required for accurate diagnosis through visual processing. This cross-sectional study introduces automated CAD software (Careline Soft’s AVIEW Metric software). This software can detect and classify lung nodules in CT scans. The performance of a deep learning (DL) model embedded in that software will be compared with that of the radiologists. Also, the feasibility of lung cancer screening protocol is evaluated in Suez Canal University Hospital, Ismailia, Egypt, by implementing Lung Imaging Reporting and Data System (Lung-RADS). Results As for the detection of the pulmonary nodules, the initial review by the CAD system (without validation by the researcher radiologist) has high sensitivity (93.0%) and specificity (95.5%) with overall accuracy of 93.6%. After review of the automatically detected nodules by the researcher radiologist was done, the final CAD has higher sensitivity (98.2%) and comparable specificity (95.5%) for the detection of pulmonary nodules with overall accuracy of 97.4%. As for lung cancer screening (categorization of Lung-RADS 3 and 4 nodules), unrevised initial computer-aided detection has 97.9% specificity and 96.9% for lung cancer screening with overall accuracy of 97.4%. After second look and review of the CAD result by the researcher radiologist, there is total agreement in total number of nodules and categorization of Lung-RADS 3 and 4. This gives an excellent agreement of 88.6% (κ = 0.951) between the CAD system and reference radiologist in the overall categorization of all lung nodules according to Lung-RADS classification. Conclusions The application of CAD system demonstrated increased sensitivity and specificity for the detection of lung nodules and total agreement in the detection of suspicious and probably benign nodules (lung cancer screening) and excellent level of agreement in the overall lung nodule categorization (Lung-RADS).
  • Yinliang Diao, Essam A. Rashed, Luca Giaccone, Ilkka Laakso, Congsheng Li, Riccardo Scorretti, Yoichi Sekiba, Kenichi Yamazaki, Akimasa Hirata
    IEEE Access 11 38739-38752 2023年4月  査読有り
  • Sachiko Kodera, Akito Takada, Essam Rashed, Akimasa Hirata
    Vaccines 11(3) 633 2023年3月13日  査読有り
  • Sachiko Kodera, Keigo Hikita, Essam A. Rashed, Akimasa Hirata
    Journal of Urban Health 100 29-39 2022年11月29日  査読有り
    Abstract During epidemics, the estimation of the effective reproduction number (ERN) associated with infectious disease is a challenging topic for policy development and medical resource management. The emergence of new viral variants is common in widespread pandemics including the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). A simple approach is required toward an appropriate and timely policy decision for understanding the potential ERN of new variants is required for policy revision. We investigated time-averaged mobility at transit stations as a surrogate to correlate with the ERN using the data from three urban prefectures in Japan. The optimal time windows, i.e., latency and duration, for the mobility to relate with the ERN were investigated. The optimal latency and duration were 5–6 and 8 days, respectively (the Spearman’s ρ was 0.109–0.512 in Tokyo, 0.365–0.607 in Osaka, and 0.317–0.631 in Aichi). The same linear correlation was confirmed in Singapore and London. The mobility-adjusted ERN of the Alpha variant was 15–30%, which was 20–40% higher than the original Wuhan strain in Osaka, Aichi, and London. Similarly, the mobility-adjusted ERN of the Delta variant was 20%–40% higher than that of the Wuhan strain in Osaka and Aichi. The proposed metric would be useful for the proper evaluation of the infectivity of different SARS-CoV-2 variants in terms of ERN as well as the design of the forecasting system.
  • Sachiko Kodera, Yuki Niimi, Essam Rashed, Naoki Yoshinaga, Masashi Toyoda, Akimasa Hirata
    Vaccines 10(11) 1820-1820 2022年10月28日  査読有り
    The variability of the COVID-19 vaccination effectiveness (VE) should be assessed with a resolution of a few days, assuming that the VE is influenced by public behavior and social activity. Here, the VE for the Omicron variants (BA.2 and BA.5) is numerically derived for Japan’s population for the second and third vaccination doses. We then evaluated the daily VE variation due to social behavior from the daily data reports in Tokyo. The VE for the Omicron variants (BA.1, BA.2, and BA.5) are derived from the data of Japan and Tokyo with a computational approach. In addition, the effect of the different parameters regarding human behavior on VE was assessed using daily data in Tokyo. The individual VE for the Omicron BA.2 in Japan was 61% (95% CI: 57–65%) for the second dose of the vaccination from our computation, whereas that for the third dose was 86% (95% CI: 84–88%). The individual BA.5 VE for the second and third doses are 37% (95% CI: 33–40%) and 63% (95% CI: 61–65%). The reduction in the daily VE from the estimated value was closely correlated to the number of tweets related to social gatherings on Twitter. The number of tweets considered here would be one of the new candidates for VE evaluation and surveillance affecting the viral transmission.
  • Esraa A. Mohamed, Tarek Gaber, Omar Karam, Essam A. Rashed
    PLoS ONE 17(10 October) 2022年10月  査読有り最終著者
    Breast cancer is the second most frequent cancer worldwide, following lung cancer and the fifth leading cause of cancer death and a major cause of cancer death among women. In recent years, convolutional neural networks (CNNs) have been successfully applied for the diagnosis of breast cancer using different imaging modalities. Pooling is a main data processing step in CNN that decreases the feature maps’ dimensionality without losing major patterns. However, the effect of pooling layer was not studied efficiently in literature. In this paper, we propose a novel design for the pooling layer called vector pooling block (VPB) for the CCN algorithm. The proposed VPB consists of two data pathways, which focus on extracting features along horizontal and vertical orientations. The VPB makes the CNNs able to collect both global and local features by including long and narrow pooling kernels, which is different from the traditional pooling layer, that gathers features from a fixed square kernel. Based on the novel VPB, we proposed a new pooling module called AVG-MAX VPB. It can collect informative features by using two types of pooling techniques, maximum and average pooling. The VPB and the AVG-MAX VPB are plugged into the backbone CNNs networks, such as U-Net, AlexNet, ResNet18 and GoogleNet, to show the advantages in segmentation and classification tasks associated with breast cancer diagnosis from thermograms. The proposed pooling layer was evaluated using a benchmark thermogram database (DMR-IR) and its results compared with U-Net results which was used as base results. The U-Net results were as follows: global accuracy = 96.6%, mean accuracy = 96.5%, mean IoU = 92.07%, and mean BF score = 78.34%. The VBP-based results were as follows: global accuracy = 98.3%, mean accuracy = 97.9%, mean IoU = 95.87%, and mean BF score = 88.68% while the AVG-MAX VPB-based results were as follows: global accuracy = 99.2%, mean accuracy = 98.97%, mean IoU = 98.03%, and mean BF score = 94.29%. Other network architectures also demonstrate superior improvement considering the use of VPB and AVG-MAX VPB.
  • Essam A. Rashed, Sachiko Kodera, Akimasa Hirata
    Computers in Biology and Medicine 149 2022年10月  査読有り責任著者
    Recently, a high number of daily positive COVID-19 cases have been reported in regions with relatively high vaccination rates; hence, booster vaccination has become necessary. In addition, infections caused by the different variants and correlated factors have not been discussed in depth. With large variabilities and different co-factors, it is difficult to use conventional mathematical models to forecast the incidence of COVID-19. Machine learning based on long short-term memory was applied to forecasting the time series of new daily positive cases (DPC), serious cases, hospitalized cases, and deaths. Data acquired from regions with high rates of vaccination, such as Israel, were blended with the current data of other regions in Japan such that the effect of vaccination was considered in efficient manner. The protection provided by symptomatic infection was also considered in terms of the population effectiveness of vaccination as well as the vaccination protection waning effect and ratio and infectivity of different viral variants. To represent changes in public behavior, public mobility and interactions through social media were also included in the analysis. Comparing the observed and estimated new DPC in Tel Aviv, Israel, the parameters characterizing vaccination effectiveness and the waning protection from infection were well estimated; the vaccination effectiveness of the second dose after 5 months and the third dose after two weeks from infection by the delta variant were 0.24 and 0.95, respectively. Using the extracted parameters regarding vaccination effectiveness, DPC in three major prefectures of Japan were replicated. The key factor influencing the prevention of COVID-19 transmission is the vaccination effectiveness at the population level, which considers the waning protection from vaccination rather than the percentage of fully vaccinated people. The threshold of the efficiency at the population level was estimated as 0.3 in Tel Aviv and 0.4 in Tokyo, Osaka, and Aichi. Moreover, a weighting scheme associated with infectivity results in more accurate forecasting by the infectivity model of viral variants. Results indicate that vaccination effectiveness and infectivity of viral variants are important factors in future forecasting of DPC. Moreover, this study demonstrate a feasible way to project the effect of vaccination using data obtained from other country.
  • Kensuke Sasaki, Emily Porter, Essam A. Rashed, Lourdes Farrugia, Gernot Schmid
    Physics in Medicine and Biology 67(14) 14TR01 2022年7月21日  査読有り
    The dielectric properties of biological tissues are fundamental pararmeters that are essential for electromagnetic modeling of the human body. The primary database of dielectric properties compiled in 1996 on the basis of dielectric measurements at frequencies from 10 Hz to 20 GHz has attracted considerable attention in the research field of human protection from non-ionizing radiation. This review summarizes findings on the dielectric properties of biological tissues at frequencies up to 1 THz since the database was developed. Although the 1996 database covered general (normal) tissues, this review also covers malignant tissues that are of interest in the research field of medical applications. An intercomparison of dielectric properties based on reported data is presented for several tissue types. Dielectric properties derived from image-based estimation techniques developed as a result of recent advances in dielectric measurement are also included. Finally, research essential for future advances in human body modeling is discussed.
  • Mona Selim, Essam A. Rashed, Mohammed A. Atiea, Hiroyuki Kudo
    PLoS ONE 17(6 June) 2022年6月  査読有り
    Ring artifact elimination is one of the popular problems in computed tomography (CT). It appears in the reconstructed image in the form of bright or dark patterns of concentric circles. In this paper, based on the compressed sensing theory, we propose a method for eliminating the ring artifact during the image reconstruction. The proposed method is based on representing the projection data by a sum of two components. The first component contains ideal correct values, while the latter contains imperfect error values causing the ring artifact. We propose to minimize some sparsity-induced norms corresponding to the imperfect error components to effectively eliminate the ring artifact. In particular, we investigate the effect of using different sparse models, i.e. different sparsity-induced norms, on the accuracy of the ring artifact correction. The proposed cost function is optimized using an iterative algorithm derived from the alternative direction method of multipliers. Moreover, we propose improved versions of the proposed algorithms by incorporating a smoothing penalty function into the cost function. We also introduce angular constrained forms of the proposed algorithms by considering a special case as follows. The imperfect error values are constant over all the projection angles, as in the case where the source of ring artifact is the non-uniform sensitivity of the detector. Real data and simulation studies were performed to evaluate the proposed algorithms. Results demonstrate that the proposed algorithms with incorporating smoothing penalty and their angular constrained forms are effective in ring artifact elimination.
  • Akimasa Hirata, Sachiko Kodera, Yinliang Diao, Essam A. Rashed
    Computers in Biology and Medicine 146 105548-105548 2022年4月  査読有り最終著者
    Background: In the summer of 2021, the Olympic Games were held in Tokyo during the state of emergency due to the spread of COVID-19 pandemic. New daily positive cases (DPC) increased before the Olympic Games, and then decreased a few weeks after the Games. However, several cofactors influencing DPC exist; consequently, careful consideration is needed for future international events during an epidemic. Methods: The impact of the Olympic Games on new DPC were evaluated in the Tokyo, Osaka, and Aichi Prefectures using a well-trained and -evaluated long short-term memory (LSTM) network. In addition, we proposed a compensation method based on effective reproduction number (ERN) to assess the effect of the national holidays on the DPC. Results: During the spread phase, the estimated DPC with LSTM was 30%–60% lower than that of the observed value, but was consistent with the compensated value of the ERN for the three prefectures. During the decay phase, the estimated DPC was consistent with the observed values. The timing of the decay coincided with achievement of a fully-vaccinated rate of 10%–15% of people aged <65 years. Conclusions: The up- and downsurge of the pandemic wave observed in July and September are likely attributable to high ERN during national holiday periods and to the vaccination effect, especially for people aged <65 years. The effect of national holidays in Tokyo was rather notable in Aichi and Osaka, which are distant from Tokyo. The effect of the Olympic Games on the spread and decay of the pandemic wave is neither dominant nor negligible due to the shifting of the national holiday dates to coincide with the Olympic Games.
  • Sachiko Kodera, Essam A. Rashed, Akimasa Hirata
    Vaccines 10(3) 2022年3月11日  査読有り
    A resurgence of COVID-19-positive cases has been observed in many countries in the latter half of 2021. The primary reasons for this resurgence are the waning immunity of vaccination after the second dose of vaccination and the changes in public behavior due to temporal convergence. The vaccination effectiveness for the omicron and delta variants has been reported from some countries, but it is still unclear for several other regions worldwide. Here, we numerically derived the effectiveness of vaccination for infection protection in individuals and populations against viral variants for the entire Japanese population (126 million). The waning immunity of vaccination for the delta variant of Japanese individuals was 93.8% (95% CI: 93.1–94.6%) among individuals <65 years of age and 95.0% (95% CI: 95.6–96.9%) among individuals ≥65 years of age. We found that waning immunity of vaccination in individuals >65 years of age was lower than in those <65 years of age, which may be attributable to human behavior and a higher vaccination rate among individuals >65 years of age. From the reported data of 25,187 positive cases with confirmed omicron variant in Tokyo in January 2022, the effectiveness of vaccination was also estimated at 62.1% (95% CI: 48–66%) compared to that of the delta variant. Derived effectiveness of vaccination would be useful to discuss the vaccination strategy for the booster shot, as well as the status of herd immunity.
  • Esraa A. Mohamed, Essam A. Rashed, Tarek Gaber, Omar Karam
    PLOS ONE 2022年1月14日  査読有り
  • Yinliang Diao, Essam A. Rashed, Akimasa Hirata
    IEEE Transactions on Electromagnetic Compatibility 2022年  査読有り
    Computational human models generated from medical images have been widely used to assess induced electric field for exposure to electromagnetic field. Traditional methods to develop human models include tissue segmentation, which involves huge effort in identifying tissues from medical images. When such models are applied to low-frequency electromagnetic dosimetry, computational artifacts result in substantial error. Deep learning techniques have been utilized to map medical images directly to tissue electrical conductivity, generating human models with smooth transitions in tissue conductivity across tissue boundaries and even within the same tissue. In this study, eight head models with smoothed conductivities were generated using the deep learning network. The induced electric fields in the models were assessed for exposure to a uniform low-frequency magnetic field and were compared with traditional segmented models. Computational results showed that the induced electric field distributions in learning-based and segmented models were consistent, and the former was smoother. The differences in the 99th to 99.99th percentile values between nonuniform and segmented models were within 8&#x0025; and 13&#x0025; for gray and white matter, respectively. The staircasing errors were suppressed in the learning-based models because of the smooth transition of the conductivity values, especially at the tissue interface. The intersubject variation of the maximum electric fields was smaller for the nonuniform models than for the segmented models, with a relative standard deviation within 12&#x0025; for nonuniform models and 22&#x0025; for segmented models. This difference is much smaller than the reduction factor of 3 associated with the numerical uncertainty set in the International Commission on Non-Ionizing Radiation Protection 2010 guidelines. Our findings could be helpful in deriving appropriate reduction factor in international guidelines, which is used for setting the limit from the threshold of adverse health effects.
  • Esraa A. Mohamed, Essam A. Rashed, Tarek Gaber, Omar Karam
    PLoS ONE 17(1 January 2022) 2022年1月  査読有り
    Breast cancer is one of the most common diseases among women worldwide. It is considered one of the leading causes of death among women. Therefore, early detection is necessary to save lives. Thermography imaging is an effective diagnostic technique which is used for breast cancer detection with the help of infrared technology. In this paper, we propose a fully automatic breast cancer detection system. First, U-Net network is used to automatically extract and isolate the breast area from the rest of the body which behaves as noise during the breast cancer detection model. Second, we propose a two-class deep learning model, which is trained from scratch for the classification of normal and abnormal breast tissues from thermal images. Also, it is used to extract more characteristics from the dataset that is helpful in training the network and improve the efficiency of the classification process. The proposed system is evaluated using real data (A benchmark, database (DMR-IR)) and achieved accuracy = 99.33%, sensitivity = 100% and specificity = 98.67%. The proposed system is expected to be a helpful tool for physicians in clinical use.
  • Dina A. Elmanakhly, Mohamed Saleh, Essam A. Rashed, Mohamed Abdel-Basset
    IEEE Access 10 26795-26816 2022年  査読有り
    In the domains of data mining and machine learning, feature selection (FS) is an essential preprocessing step that has a significant effect on the machine learning model's performance. The primary purpose of FS is to eliminate unnecessary features, resulting in time-space reduction as well as improved the corresponding learning model performance. Horse herd optimization algorithm (HOA) is a new metaheuristic algorithm that mimics the herding behavior of horses. Within a wrapper-based approach, a binary version of HOA is proposed in this study to select the optimal subset of features for classification purposes. The transfer function is the most important aspect of the binary version. Eight transfer functions, S-shaped and V-shaped, are tested to map the continuous search space into binary search space. Two main enhancements are integrated into the standard HOA to strengthen its performance. A Levy flight operator is added to improve the HOA's exploring behavior and alleviate local minimal stagnation. Secondly, a local search algorithm is integrated to enhance the best solution obtained after each iteration of HOA. The purpose of the second enhancement is to increase the exploitation capability by looking for the most promising places discovered by HOA. Large-scaled, middle-scaled, and low-scaled datasets from reputable data repositories are used to validate the performance of the proposed algorithm (BinHOA). Comparative tests with state-of-the-art algorithms reveal that the Levy flight with the local search algorithm have a significant favorable impact on the performance of HOA. An enhancement of the population diversity is observed with avoidance of being trapped in local optima.
  • Nagwa Reda, Abeer Hamdy, Essam A. Rashed
    Intelligent Automation & Soft Computing 31(2) 781-797 2022年  査読有り最終著者
    Regression testing is an essential quality test technique during the maintenance phase of the software. It is executed to ensure the validity of the software after any modification. As software evolves, the test suite expands and may become too large to be executed entirely within a limited testing budget and/or time. So, to reduce the cost of regression testing, it is mandatory to reduce the size of the test suite by discarding the redundant test cases and selecting the most representative ones that do not compromise the effectiveness of the test suite in terms of some predefined criteria such as its fault-detection capability. This problem is known as test suite reduction (TSR); and it is known to be as nondeter-ministic polynomial-time complete (NP-complete) problem. This paper formulated the TSR problem as a multi-objective optimization problem; and adapted the heuristic binary bat algorithm (BBA) to resolve it. The BBA algorithm was adapted in order to enhance its exploration capabilities during the search for Pareto-optimal solutions. The effectiveness of the proposed multi-objective adapted binary bat algorithm (MO-ABBA) was evaluated using 8 test suites of different sizes, in addition to twelve benchmark functions. Experimental results showed that, for the same fault discovery rate, the MO-ABBA is capable of reducing the test suite size more than each of the multi-objective original binary bat (MO-BBA) and the multi-objective binary particle swarm optimization (MO-BPSO) algorithms. Moreover, MO-ABBA converges to the best solutions faster than each of the MO-BBA and the MO-BPSO.
  • Essam Rashed
    IEEE Transactions on Electromagnetic Compatibility 63(5) 1619-1630 2021年10月  査読有り
  • Essam Rashed, Akimasa Hirata
    International Journal of Environmental Research and Public Health 18(15) 7799-7799 2021年7月22日  査読有り筆頭著者責任著者
    The significant health and economic effects of COVID-19 emphasize the requirement for reliable forecasting models to avoid the sudden collapse of healthcare facilities with overloaded hospitals. Several forecasting models have been developed based on the data acquired within the early stages of the virus spread. However, with the recent emergence of new virus variants, it is unclear how the new strains could influence the efficiency of forecasting using models adopted using earlier data. In this study, we analyzed daily positive cases (DPC) data using a machine learning model to understand the effect of new viral variants on morbidity rates. A deep learning model that considers several environmental and mobility factors was used to forecast DPC in six districts of Japan. From machine learning predictions with training data since the early days of COVID-19, high-quality estimation has been achieved for data obtained earlier than March 2021. However, a significant upsurge was observed in some districts after the discovery of the new COVID-19 variant B.1.1.7 (Alpha). An average increase of 20–40% in DPC was observed after the emergence of the Alpha variant and an increase of up to 20% has been recognized in the effective reproduction number. Approximately four weeks was needed for the machine learning model to adjust the forecasting error caused by the new variants. The comparison between machine-learning predictions and reported values demonstrated that the emergence of new virus variants should be considered within COVID-19 forecasting models. This study presents an easy yet efficient way to quantify the change caused by new viral variants with potential usefulness for global data analysis.
  • Essam Rashed
    Frontiers in Neuroscience 15 2021年6月28日  査読有り
    Electroencephalogram (EEG) is a method to monitor electrophysiological activity on the scalp, which represents the macroscopic activity of the brain. However, it is challenging to identify EEG source regions inside the brain based on data measured by a scalp-attached network of electrodes. The accuracy of EEG source localization significantly depends on the type of head modeling and inverse problem solver. In this study, we adopted different models with a resolution of 0.5 mm to account for thin tissues/fluids, such as the cerebrospinal fluid (CSF) and dura. In particular, a spatially dependent conductivity (segmentation-free) model created using deep learning was developed and used for more realist representation of electrical conductivity. We then adopted a multi-grid-based finite-difference method (FDM) for forward problem analysis and a sparse-based algorithm to solve the inverse problem. This enabled us to perform efficient source localization using high-resolution model with a reasonable computational cost. Results indicated that the abrupt spatial change in conductivity, inherent in conventional segmentation-based head models, may trigger source localization error accumulation. The accurate modeling of the CSF, whose conductivity is the highest in the head, was an important factor affecting localization accuracy. Moreover, computational experiments with different noise levels and electrode setups demonstrate the robustness of the proposed method with segmentation-free head model.
  • Yuki Nakano, Essam Rashed, Tatsuhito Nakane, Ilkka Laakso, Akimasa Hirata
    Sensors 21(13) 4275-4275 2021年6月22日  査読有り
    The 12-lead electrocardiogram was invented more than 100 years ago and is still used as an essential tool in the early detection of heart disease. By estimating the time-varying source of the electrical activity from the potential changes, several types of heart disease can be noninvasively identified. However, most previous studies are based on signal processing, and thus an approach that includes physics modeling would be helpful for source localization problems. This study proposes a localization method for cardiac sources by combining an electrical analysis with a volume conductor model of the human body as a forward problem and a sparse reconstruction method as an inverse problem. Our formulation estimates not only the current source location but also the current direction. For a 12-lead electrocardiogram system, a sensitivity analysis of the localization to cardiac volume, tilted angle, and model inhomogeneity was evaluated. Finally, the estimated source location is corrected by Kalman filter, considering the estimated electrocardiogram source as time-sequence data. For a high signal-to-noise ratio (greater than 20 dB), the dominant error sources were the model inhomogeneity, which is mainly attributable to the high conductivity of the blood in the heart. The average localization error of the electric dipole sources in the heart was 12.6 mm, which is comparable to that in previous studies, where a less detailed anatomical structure was considered. A time-series source localization with Kalman filtering indicated that source mislocalization could be compensated, suggesting the effectiveness of the source estimation using the current direction and location simultaneously. For the electrocardiogram R-wave, the mean distance error was reduced to less than 7.3 mm using the proposed method. Considering the physical properties of the human body with Kalman filtering enables highly accurate estimation of the cardiac electric signal source location and direction. This proposal is also applicable to electrode configuration, such as ECG sensing systems.
  • Yinliang Diao, Sachiko Kodera, Daisuke Anzai, Jose Gomez-Tames, Essam A. Rashed, Akimasa Hirata
    One Health 12 100203-100203 2021年6月  査読有り
    In this study, we analyzed the spread and decay durations of the COVID-19 pandemic in several cities of China, England, Germany, and Japan, where the first wave has undergone decay. Differences in medical and health insurance systems, as well as in regional policies incommoded the comparison of the spread and decay in different cities and countries. The spread and decay durations in the cities of the four studied countries were reordered and calculated based on an asymmetric bell-shaped model. We acquired the values of the ambient temperature, absolute humidity, and population density to perform multivariable analysis. We found a significant correlation (p < 0.05) of the spread and decay durations with population density in the four analyzed countries. Specifically, spread duration showed a high correlation with population density and absolute humidity (p < 0.05), whereas decay duration demonstrated the highest correlation with population density, absolute humidity, and maximum temperature (p < 0.05). The effect of population density was almost nonexistent in China because of the implemented strict lockdown. Our findings will be useful in policy setting and governmental actions in the next pandemic, as well as in the next waves of COVID-19.
  • Essam Rashed, Akimasa Hirata
    International Journal of Environmental Research and Public Health 18(11) 5736-5736 2021年5月27日  査読有り筆頭著者責任著者
    With the wide spread of COVID-19 and the corresponding negative impact on different life aspects, it becomes important to understand ways to deal with the pandemic as a part of daily routine. After a year of the COVID-19 pandemic, it has become obvious that different factors, including meteorological factors, influence the speed at which the disease is spread and the potential fatalities. However, the impact of each factor on the speed at which COVID-19 is spreading remains controversial. Accurate forecasting of potential positive cases may lead to better management of healthcare resources and provide guidelines for government policies in terms of the action required within an effective timeframe. Recently, Google Cloud has provided online COVID-19 forecasting data for the United States and Japan, which would help in predicting future situations on a state/prefecture scale and are updated on a day-by-day basis. In this study, we propose a deep learning architecture to predict the spread of COVID-19 considering various factors, such as meteorological data and public mobility estimates, and applied it to data collected in Japan to demonstrate its effectiveness. The proposed model was constructed using a neural network architecture based on a long short-term memory (LSTM) network. The model consists of multi-path LSTM layers that are trained using time-series meteorological data and public mobility data obtained from open-source data. The model was tested using different time frames, and the results were compared to Google Cloud forecasts. Public mobility is a dominant factor in estimating new positive cases, whereas meteorological data improve their accuracy. The average relative error of the proposed model ranged from 16.1% to 22.6% in major regions, which is a significant improvement compared with Google Cloud forecasting. This model can be used to provide public awareness regarding the morbidity risk of the COVID-19 pandemic in a feasible manner.
  • Essam Rashed
    Journal of Biomedical Informatics 117 103743-103743 2021年5月  査読有り筆頭著者責任著者
  • Nagwa R. Fisal, Abeer Hamdy, Essam A. Rashed
    International Journal of Open Source Software and Processes 12(2) 1-20 2021年4月  査読有り最終著者
    Regression testing is one of the essential activities during the maintenance phase of software projects. It is executed to ensure the validity of an altered software. However, as the software evolves, regression testing becomes prohibitively expensive. In order to reduce the cost of regression testing, it is mandatory to reduce the size of the test suite by selecting the most representative test cases that do not compromise the effectiveness of the regression testing in terms of fault-detection capability. This problem is known as test suite reduction (TSR) problem, and it is known to be an NP-complete. The paper proposes a multi-objective adapted binary bat algorithm (ABBA) to solve the TSR problem. The original binary bat (OBBA) algorithm was adapted to enhance its exploration capabilities during the search for a Pareto-optimal surface. The effectiveness of the ABBA was evaluated using six Java programs with different sizes. Experimental results showed that for the same fault discovery rate, the ABBA is capable of reducing the test suite size more than the OBBA and the BPSO.
  • Essam A Rashed, Jose Gomez-Tames, Akimasa Hirata
    Physics in Medicine & Biology 66(6) 064002-064002 2021年3月21日  査読有り筆頭著者責任著者
    In several diagnosis and therapy procedures based on electrostimulation effect, the internal physical quantity related to the stimulation is the induced electric field. To estimate the induced electric field in an individual human model, the segmentation of anatomical imaging, such as magnetic resonance image (MRI) scans, of the corresponding body parts into tissues is required. Then, electrical properties associated with different annotated tissues are assigned to the digital model to generate a volume conductor. However, the segmentation of different tissues is a tedious task with several associated challenges specially with tissues appear in limited regions and/or low-contrast in anatomical images. An open question is how segmentation accuracy of different tissues would influence the distribution of the induced electric field. In this study, we applied parametric segmentation of different tissues to exploit the segmentation of available MRI to generate different quality of head models using deep learning neural network architecture, named ForkNet. Then, the induced electric field are compared to assess the effect of model segmentation variations. Computational results indicate that the influence of segmentation error is tissue-dependent. In brain, sensitivity to segmentation accuracy is relatively high in cerebrospinal fluid (CSF), moderate in gray matter (GM) and low in white matter for transcranial magnetic stimulation (TMS) and transcranial electrical stimulation (tES). A CSF segmentation accuracy reduction of 10% in terms of Dice coefficient (DC) lead to decrease up to 4% in normalized induced electric field in both applications. However, a GM segmentation accuracy reduction of 5.6% DC leads to increase of normalized induced electric field up to 6%. Opposite trend of electric field variation was found between CSF and GM for both TMS and tES. The finding obtained here would be useful to quantify potential uncertainty of computational results.
  • Dina A. Elmanakhly, Mohamed Mostafa Saleh, Essam A. Rashed
    IEEE Access 9 120309-120327 2021年  査読有り最終著者
  • Essam A. Rashed, Yinliang Diao, Shota Tanaka, Takashi Sakai, Jose Gomez-Tames, Akimasa Hirata
    IEEE Transactions on Electromagnetic Compatibility 62(6) 2704-2713 2020年12月  査読有り筆頭著者責任著者
    The human dosimetry for electromagnetic field exposure is an essential task to develop exposure guidelines/standards for human safety as well as product safety assessment. At frequencies from a few 100 Hz to 10 MHz, the adverse effect to be protected is the stimulation of the peripheral nervous system. The in situ electric field in the skin is used as a surrogate of nerve activation. In the low-frequency dosimetry, a high but inaccurate in situ electric field has been reported at positions where a skin-to-skin contact exists, whose relation to the stimulation is controversial. One of the reasons for high electric fields may be attributable to the current resolution of anatomical models. In this study, we first evaluate the stimulation threshold at postures of skin-to-skin contact experimentally for different hand/finger positions to represent skin touching/nontouching scenarios. We confirm that the skin-to-skin contact does not lower the threshold current of magnetic stimulation devices needed to induce pain. Second, a new method is proposed for hand modeling to configure different finger positions using static hand models with similar postures to the experiments. We compute the in situ electric field at skin-to-skin contact for the different hand posture scenarios that indicate an excessive raise of the electric field in skin-to-skin regions that is not justified by the experiments. The comparison suggests that a high in situ electric field in the skin would be caused by poor modeling of the skin layers, which is not enough to represent in a resolution of the order of a millimeter. This skin-to-skin contact should not be considered to set the restriction in the international exposure guidelines/standards as well as product safety assessment.
  • Yinliang Diao, Essam A Rashed, Akimasa Hirata
    Physics in Medicine & Biology 65(22) 224001-224001 2020年11月21日  査読有り
  • Sachiko Kodera, Akimasa Hirata, Fumiaki Miura, Essam A. Rashed, Natsuko Hatsusaka, Naoki Yamamoto, Eri Kubo, Hiroshi Sasaki
    Computers in Biology and Medicine 126 104009-104009 2020年11月  査読有り
    Recent epidemiological studies have hypothesized that the prevalence of cortical cataracts is closely related to ultraviolet radiation. However, the prevalence of nuclear cataracts is higher in elderly people in tropical areas than in temperate areas. The dominant factors inducing nuclear cataracts have been widely debated. In this study, the temperature increase in the lens due to exposure to ambient conditions was computationally quantified in subjects of 50-60 years of age in tropical and temperate areas, accounting for differences in thermoregulation. A thermoregulatory response model was extended to consider elderly people in tropical areas. The time course of lens temperature for different weather conditions in five cities in Asia was computed. The temperature was higher around the mid and posterior part of the lens, which coincides with the position of the nuclear cataract. The duration of higher temperatures in the lens varied, although the daily maximum temperatures were comparable. A strong correlation (adjusted R2 > 0.85) was observed between the prevalence of nuclear cataract and the computed cumulative thermal dose in the lens. We propose the use of a cumulative thermal dose to assess the prevalence of nuclear cataracts. Cumulative wet-bulb globe temperature, a new metric computed from weather data, would be useful for practical assessment in different cities.
  • Sachiko Kodera, Essam A. Rashed, Akimasa Hirata
    International Journal of Environmental Research and Public Health 17(15) 5477-5477 2020年7月29日  査読有り
    This study analyzed the morbidity and mortality rates of the coronavirus disease (COVID-19) pandemic in different prefectures of Japan. Under the constraint that daily maximum confirmed deaths and daily maximum cases should exceed 4 and 10, respectively, 14 prefectures were included, and cofactors affecting the morbidity and mortality rates were evaluated. In particular, the number of confirmed deaths was assessed, excluding cases of nosocomial infections and nursing home patients. The correlations between the morbidity and mortality rates and population density were statistically significant (p-value &lt; 0.05). In addition, the percentage of elderly population was also found to be non-negligible. Among weather parameters, the maximum temperature and absolute humidity averaged over the duration were found to be in modest correlation with the morbidity and mortality rates. Lower morbidity and mortality rates were observed for higher temperature and absolute humidity. Multivariate linear regression considering these factors showed that the adjusted determination coefficient for the confirmed cases was 0.693 in terms of population density, elderly percentage, and maximum absolute humidity (p-value &lt; 0.01). These findings could be useful for intervention planning during future pandemics, including a potential second COVID-19 outbreak.
  • Essam Rashed, Sachiko Kodera, Jose Gomez-Tames, Akimasa Hirata
    International Journal of Environmental Research and Public Health 17(15) 5354-5354 2020年7月24日  査読有り筆頭著者
    This study analyzed the spread and decay durations of the COVID-19 pandemic in different prefectures of Japan. During the pandemic, affordable healthcare was widely available in Japan and the medical system did not suffer a collapse, making accurate comparisons between prefectures possible. For the 16 prefectures included in this study that had daily maximum confirmed cases exceeding ten, the number of daily confirmed cases follow bell-shape or log-normal distribution in most prefectures. A good correlation was observed between the spread and decay durations. However, some exceptions were observed in areas where travelers returned from foreign countries, which were defined as the origins of infection clusters. Excluding these prefectures, the population density was shown to be a major factor, affecting the spread and decay patterns, with R2 = 0.39 (p &lt; 0.05) and 0.42 (p &lt; 0.05), respectively, approximately corresponding to social distancing. The maximum absolute humidity was found to affect the decay duration normalized by the population density (R2 &gt; 0.36, p &lt; 0.05). Our findings indicate that the estimated pandemic spread duration, based on the multivariate analysis of maximum absolute humidity, ambient temperature, and population density (adjusted R2 = 0.53, p-value &lt; 0.05), could prove useful for intervention planning during potential future pandemics, including a second COVID-19 outbreak.
  • Essam A. Rashed, Jose Gomez-Tames, Akimasa Hirata
    IEEE Transactions on Medical Imaging 39(7) 2351-2362 2020年7月  査読有り筆頭著者責任著者
    Electromagnetic stimulation of the human brain is a key tool for neurophysiological characterization and the diagnosis of several neurological disorders. Transcranial magnetic stimulation (TMS) is a commonly used clinical procedure. However, personalized TMS requires a pipeline for individual head model generation to provide target-specific stimulation. This process includes intensive segmentation of several head tissues based on magnetic resonance imaging (MRI), which has significant potential for segmentation error, especially for low-contrast tissues. Additionally, a uniform electrical conductivity is assigned to each tissue in the model, which is an unrealistic assumption based on conventional volume conductor modeling. This study proposes a novel approach for fast and automatic estimation of the electric conductivity in the human head for volume conductor models without anatomical segmentation. A convolutional neural network is designed to estimate personalized electrical conductivity values based on anatomical information obtained from T1- and T2-weighted MRI scans. This approach can avoid the time-consuming process of tissue segmentation and maximize the advantages of position-dependent conductivity assignment based on the water content values estimated from MRI intensity values. The computational results of the proposed approach provide similar but smoother electric field distributions of the brain than that provided by conventional approaches.
  • Rashed, E.A., Gomez-Tames, J., Hirata, A.
    Neural Networks 125 233-244 2020年5月  査読有り筆頭著者責任著者
  • Essam A Rashed, Yinliang Diao, Akimasa Hirata
    Physics in Medicine & Biology 65(6) 065001-065001 2020年3月11日  査読有り筆頭著者責任著者
  • Taiki Murakawa, Yinliang Diao, Essam A. Rashed, Sachiko Kodera, Yoshihiro Tanaka, Yoshitsugu Kamimura, Shin Kitamura, Shintaro Uehara, Yohei Otaka, Akimasa Hirata
    IEEE Access 8 200995-201004 2020年  査読有り
  • Diao, Y., Rashed, E.A., Hirata, A.
    IEEE Access 8 154060-154071 2020年  査読有り
  • Essam A. Rashed, Jose Gomez-Tames, Akimasa Hirata
    NeuroImage 202 116132-116132 2019年11月  査読有り筆頭著者責任著者
    The development of personalized human head models from medical images has become an important topic in the electromagnetic dosimetry field, including the optimization of electrostimulation, safety assessments, etc. Human head models are commonly generated via the segmentation of magnetic resonance images into different anatomical tissues. This process is time consuming and requires special experience for segmenting a relatively large number of tissues. Thus, it is challenging to accurately compute the electric field in different specific brain regions. Recently, deep learning has been applied for the segmentation of the human brain. However, most studies have focused on the segmentation of brain tissue only and little attention has been paid to other tissues, which are considerably important for electromagnetic dosimetry.In this study, we propose a new architecture for a convolutional neural network, named ForkNet, to perform the segmentation of whole human head structures, which is essential for evaluating the electrical field distribution in the brain. The proposed network can be used to generate personalized head models and applied for the evaluation of the electric field in the brain during transcranial magnetic stimulation. Our computational results indicate that the head models generated using the proposed network exhibit strong matching with those created via manual segmentation in an intra-scanner segmentation task.
  • Sachiko Kodera, Taku Nishimura, Essam A. Rashed, Kazuma Hasegawa, Ichiro Takeuchi, Ryusuke Egawa, Akimasa Hirata
    Environment International 130 104907-104907 2019年9月  査読有り
    In recent years, the rates of heat-related morbidity and mortality have begun to increase with the increase in global warming; in this context, it is noteworthy that the number of patients transported by ambulance in heat-related cases in Japan reached 95,137 in 2018. The estimation of heat-related morbidity forms a key factor in proposing and implementing suitable intervention strategies and ambulance availability and arrangements. Heat-related morbidity is known to be fairly correlated to metrics related to ambient conditions, thus necessitating the exploration of new metrics to more accurately estimate morbidity. In this study, we use an integrated computational technique relating to thermodynamics and thermoregulation to estimate daily peak core temperature elevation and daily water loss, which are linked to heat-related illnesses, from weather data of three different prefectures in Japan (Tokyo, Osaka, and Aichi). The correlations of the computed core temperature elevation and water loss as well as conventional ambient conditions are investigated in terms of number of patients suffering from heat-related illnesses transported by ambulance from 2013 to 2018. The estimated water loss per the proposed computation yields better correlation with the number of patients transported by ambulance. In particular, the weight-sum daily water loss for two to three successive days is found to be an important metric for predicting the number of patients transported by ambulance. For the same ambient conditions, morbidity is found to decrease to 0.4 owing to heat adaption at the end of summer (60 days) as compared with that at the end of the rainy season. Thus, the weighted sum of water loss and daily average ambient temperature for successive days can be used as better metrics than conventional weather data for the application of intervention strategies and planning of ambulance arrangements for heat-related morbidity.

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