研究者業績

石澤 秀紘

イシザワ ヒデヒロ  (Hidehiro Ishizawa)

基本情報

所属
兵庫県立大学 大学院 工学研究科 助教
学位
博士(工学)(2020年3月 大阪大学)

連絡先
ishizawahidehirogmail.com
研究者番号
90888265
ORCID ID
 https://orcid.org/0000-0003-0026-6039
J-GLOBAL ID
202001007668662740
researchmap会員ID
R000003339

受賞

 3

論文

 27
  • Masahiro Takeo, Seiwa Ohtaki, Hidehiro Ishizawa
    Microbiology Resource Announcements 2024年12月27日  査読有り
    ABSTRACT We report the complete genome assembly of a hydroquinonesulfonate-assimilating bacterium, Delftia lacustris strain HQS1. This strain contains one circular chromosome (6,979,964 bp) and one circular plasmid (39,999 bp). The chromosomal sequence contained 6,359 coding sequences and a gene cluster involved in the degradation of gentisate, which is structurally similar to hydroquinonesulfonate.
  • Hidehiro Ishizawa, Yosuke Tashiro, Takashi Okada, Daisuke Inoue, Michihiko Ike, Hiroyuki Futamata
    Science of the Total Environment 957 177717 2024年12月  筆頭著者責任著者
  • Hidehiro Ishizawa, Minami Tada, Yosuke Tashiro, Masashi Kuroda, Daisuke Inoue, Hideo Dohra, Hiroyuki Futamata, Michihiko Ike
    Microbiology Resource Announcements 2024年3月  査読有り筆頭著者責任著者
    ABSTRACT We report the complete genome sequences of six bacterial strains isolated from a floating macrophyte, duckweed. These six strains, representing the six dominant families of the natural duckweed microbiome, establish a simple model ecosystem when inoculated onto sterilized duckweed. Their genomes would provide insights into community assembly in plant microbiome.
  • Hidehiro Ishizawa, Yosuke Tashiro, Daisuke Inoue, Michihiko Ike, Hiroyuki Futamata
    Proceedings of the National Academy of Sciences 121(7) 2024年2月5日  査読有り筆頭著者責任著者
    Understanding the assembly of multispecies microbial communities represents a significant challenge in ecology and has wide applications in agriculture, wastewater treatment, and human healthcare domains. Traditionally, studies on the microbial community assembly focused on analyzing pairwise relationships among species; however, neglecting higher-order interactions, i.e., the change of pairwise relationships in the community context, may lead to substantial deviation from reality. Herein, we have proposed a simple framework that incorporates higher-order interactions into a bottom–up prediction of the microbial community assembly and examined its accuracy using a seven-member synthetic bacterial community on a host plant, duckweed. Although the synthetic community exhibited emergent properties that cannot be predicted from pairwise coculturing results, our results demonstrated that incorporating information from three-member combinations allows the acceptable prediction of the community structure and actual interaction forces within it. This reflects that the occurrence of higher-order effects follows consistent patterns, which can be predicted even from trio combinations, the smallest unit of higher-order interactions. These results highlight the possibility of predicting, explaining, and understanding the microbial community structure from the bottom–up by learning interspecies interactions from simple beyond-pairwise combinations.
  • Masahiro Takeo, Ryota Ino, Seiwa Ohtaki, Mayu Kuroe, Yota Komaki, Hidehiro Ishizawa
    Japanese Journal of Water Treatment Biology 60(4) 73-86 2024年  査読有り

MISC

 7
  • 石澤秀紘
    化学と生物 62(11) 523-525 2024年11月  
  • 石澤秀紘, 田代陽介, 井上大介, 池道彦, 二又裕之
    兵庫県立大学プレスリリース 2024年2月  
  • 奥田萌莉, 石澤秀紘, 大島裕明
    画像ラボ2024年2月号 2024年1月  招待有り
  • Hidehiro Ishizawa, Yosuke Tashiro, Daisuke Inoue, Michihiko Ike, Hiroyuki Futamata
    bioRxiv 2023年7月6日  筆頭著者責任著者
    Abstract The way to deal with higher-order effects (i.e., modification of pairwise interactions by third-party species) has been a major consideration in community ecology. Ignoring these effects is not in line with reality, yet fully considering them make the situation overly complex. Here, we propose a simple framework incorporating higher-order effects into a bottom-up community modeling, and assessed its validity using a seven-member synthetic bacterial community on a host plant, duckweed. Our findings revealed that actual interspecies interactions in community could not be predicted from pairwise co-culturing results; however, using information from trio combinations allowed for acceptable prediction. In addition, inclusion of four-, five-, and six-member combinations did not markedly enhance the prediction accuracy from trio-based prediction, suggesting that trio combinations, the smallest unit of higher-order effects, provide a reasonable baseline to unravel complex interaction networks. Building on this finding, we developed a prediction rule to estimate the structure of 4 – 7 member communities based on information from ≤ 3-member combinations, which yielded significantly better accuracy (relative mean square percentage errors of 22.7% – 61.2%) than pairwise-based model (53.5% – 185.2%). This highlights the possibility of establishing a quantitative link between the interspecies interactions and community structure, by observing beyond-pairwise combinations.
  • 石澤秀紘, 黒田真史, 井上大介, 池道彦
    大阪大学超高圧電子顕微鏡センター年報 49 2020年  招待有り

書籍等出版物

 1

共同研究・競争的資金等の研究課題

 6