Curriculum Vitaes

Fumitaka Yura

  (由良 文孝)

Profile Information

Affiliation
Professor, Faculty of Engineering Department of Mathematical Engineering, Musashino University
Degree
博士(工学)(Mar, 1998, The University of Tokyo)
修士(工学)(Mar, 1995, The University of Tokyo)
学士(工学)(Mar, 1993, The University of Tokyo)

researchmap Member ID
5000077360

Major Papers

 16
  • Kazuo Tonami, Tatsuya Hayashi, Yasunobu Uchijima, Masahiro Kanai, Fumitaka Yura, Jun Mada, Kei Sugahara, Yukiko Kurihara, Yuri Kominami, Toshiyuki Ushijima, Naoko Takubo, Xiaoxiao Liu, Hideto Tozawa, Yoshimitsu Kanai, Tetsuji Tokihiro, Hiroki Kurihara
    iScience, 26(7) 107051-107051, Jun, 2023  
  • Hiroki Kurihara, Jun Mada, Tetsuji Tokihiro, Kazuo Tonami, Toshiyuki Ushijima, Fumitaka Yura
    Theoretical Biology, 25-83, 2021  
  • Naoko Takubo, Fumitaka Yura, Kazuaki Naemura, Ryo Yoshida, Terumasa Tokunaga, Tetsuji Tokihiro, Hiroki Kurihara
    Scientific Reports, 9(1) 9304-9304, Dec, 2019  Peer-reviewed
    Vascular endothelial cells (ECs) in angiogenesis exhibit inhomogeneous collective migration called "cell mixing", in which cells change their relative positions by overtaking each other. However, how such complex EC dynamics lead to the formation of highly ordered branching structures remains largely unknown. To uncover hidden laws of integration driving angiogenic morphogenesis, we analyzed EC behaviors in an in vitro angiogenic sprouting assay using mouse aortic explants in combination with mathematical modeling. Time-lapse imaging of sprouts extended from EC sheets around tissue explants showed directional cohesive EC movements with frequent U-turns, which often coupled with tip cell overtaking. Imaging of isolated branches deprived of basal cell sheets revealed a requirement of a constant supply of immigrating cells for ECs to branch forward. Anisotropic attractive forces between neighboring cells passing each other were likely to underlie these EC motility patterns, as evidenced by an experimentally validated mathematical model. These results suggest that cohesive movements with anisotropic cell-to-cell interactions characterize the EC motility, which may drive branch elongation depending on a constant cell supply. The present findings provide novel insights into a cell motility-based understanding of angiogenic morphogenesis.
  • K. Matsuya, F. Yura, J. Mada, H. Kurihara, T. Tokihiro
    SIAM JOURNAL ON APPLIED MATHEMATICS, 76(6) 2243-2259, 2016  Peer-reviewed
    Angiogenesis is the morphogenetic phenomenon in which new blood vessels emerge from an existing vascular network and configure a new network. In consideration of recent experiments with time-lapse fluorescent imaging in which vascular endothelial cells exhibit cell-mixing behavior even at a tip of newly generated vascular networks, we propose a discrete mathematical model for the dynamics of vascular endothelial cells in angiogenic morphogenesis. The model incorporates two-body interaction between endothelial cells which induces cell-mixing behavior and length of the generating blood vessel shows temporal power-law scaling behavior. Numerical simulation of the model successfully reproduces elongation and bifurcation of blood vessels in the early stage of angiogenesis.
  • Yura, F.
    Linear Algebra and Its Applications, 484, 2015  Peer-reviewedCorresponding author
  • Fumitaka Yura
    JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 47(32), Aug, 2014  Peer-reviewedCorresponding author
    We propose a solitonic dynamical system over finite fields that may be regarded as an analogue of the box-ball systems. The one-soliton solutions of the system, which have nested structures similar to fractals, are also proved. The solitonic system in this paper is described by polynomials, which seems to be novel. Furthermore, in spite of such complex internal structures, numerical simulations exhibit stable propagations before and after collisions among multiple solitons, preserving their patterns.
  • Nobe, A., Yura, F.
    Cellular Automata, 165-209, 2011  Peer-reviewed
  • Atsushi Nobe, Fumitaka Yura
    JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 40(26) 7159-7174, Jun, 2007  Peer-reviewed
    The initial value problem for a class of reversible elementary cellular automata with periodic boundaries is reduced to an initial- boundary value problem for a class of linear systems on a finite commutative ring Z(2). Moreover, a family of such linearizable cellular automata is given.
  • A Nobe, F Yura
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 37(22) 5789-5804, Jun, 2004  Peer-reviewed
    Reversibility of one-dimensional cellular automata with periodic boundary conditions is discussed. It is shown that there exist exactly 16 reversible elementary cellular automaton rules for infinitely many cell sizes by means of a correspondence between elementary cellular automaton and the de Bruijn graph. In addition, a sufficient condition for reversibility of three-valued and two-neighbour cellular automaton is given.
  • K Matsumoto, F Yura
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 37(15) L167-L171, Apr, 2004  Peer-reviewed
    We study the entanglement cost of the states in the antisymmetric space, which consists of (d - 1) d-dimensional systems. The cost is always 1092(d - 1) ebits when the state is divided into bipartite C-d circle times (C-d)(d-2). Combined with the arguments in [6], additivity of channel capacity of some quantum channels is also shown.
  • F Yura
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 36(15) L237-L242, Apr, 2003  Peer-reviewed
    We show that the entanglement cost of the three-dimensional antisymmetric states is one ebit.
  • D Yoshihara, F Yura, T Tokihiro
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 36(1) 99-121, Jan, 2003  Peer-reviewed
    We investigate a box-ball system with periodic boundary conditions. Since the box-ball system is a deterministic dynamical system that takes only a finite number of states, it will exhibit periodic motion. We determine its fundamental cycle for a given initial state.
  • F Yura, T Tokihiro
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 35(16) 3787-3801, Apr, 2002  Peer-reviewed
    We propose a box and ball system with a periodic boundary condition periodic box and ball system (pBBS). The time evolution rule of the pBBS is represented as a Boolean recurrence formula, an inverse ultradiscretization of which is shown to be equivalent to the algorithm of the calculus for the 2Nth root. The relations to the pBBS of the combinatorial R matrix of U-q' (A(N)((1))) are also discussed.
  • E. HANAMURA, J. INOUE, F. YURA
    Journal of Nonlinear Optical Physics & Materials, 04(01) 13-25, Jan, 1995  Peer-reviewed
    After reviewing the important roles of excitons in nonlinear optical responses, we demonstrate mutual and quantum-mechanical control of radiation field and excitons on the same footing in a microcavity. First we introduce dressed excitons as bosons interacting coherently and reversibly with a radiation mode in the microcavity. Although the vacuum Rabi splitting of the dressed exciton is the same as that of dressed atom, the emission spectrum under strong pumping shows quartet structure different from the triplet of dressed atom. Secondly, the population dynamics of dressed excitons, i.e., one-dimensional polaritons in the mesoscopic system is solved and the dominant distribution on a single mode is demonstrated above the critical pumping.
  • Yura, F., Hanamura, E.
    Physical Review B, 50(20) 15457-15460, Nov 15, 1994  Peer-reviewed
  • Tsukada, I., Terasaki, I., Hoshi, T., Yura, F., Uchinokura, K.
    Journal of Applied Physics, 76(2) 1317-1319, Jul 15, 1994  Peer-reviewed

Misc.

 36
  • Tatsuya Hayashi, Fumitaka Yura, Jun Mada, Hiroki Kurihara, Tetsuji Tokihiro
    Journal of Theoretical Biology, 555 111300-111300, Dec, 2022  
    A two-dimensional mathematical model for dynamics of endothelial cells in angiogenesis is investigated. Angiogenesis is a morphogenic process in which new blood vessels emerge from an existing vascular network. Recently a one-dimensional discrete dynamical model has been proposed to reproduce elongation, bifurcation, and cell motility such as cell-mixing during angiogenesis on the assumption of a simple two-body interaction between endothelial cells. The present model is its two-dimensional extension, where endothelial cells are represented as the ellipses with the two-body interactions: repulsive interaction due to excluded volume effect, attractive interaction through pseudopodia and rotation by contact. We show that the oblateness of ellipses and the magnitude of contact rotation significantly affect the shape of created vascular patterns and elongation of branches.
  • 礪波一夫, 林達也, 林達也, 金井政宏, 由良文孝, 間田潤, 須賀原啓, 劉瀟瀟, 内島泰信, 時弘哲治, 栗原裕基
    日本分子生物学会年会プログラム・要旨集(Web), 42nd, 2019  
  • 礪波一夫, 林達也, 林達也, 金井政宏, 由良文孝, 間田潤, 劉瀟瀟, 須賀原啓, 内島泰信, 時弘哲治, 栗原裕基
    日本心血管内分泌代謝学会学術総会プログラム及び抄録集, 23rd, 2019  
  • 由良文孝, 田久保直子, 林達也, 間田潤, 栗原裕基, 栗原裕基, 時弘哲治, 時弘哲治
    日本応用数理学会年会講演予稿集(CD-ROM), 2018 211‐212, Sep 3, 2018  
  • 林達也, 林達也, 由良文孝, 間田潤, 時弘哲治, 時弘哲治, 礪波一夫, 栗原裕基, 栗原裕基
    日本応用数理学会年会講演予稿集(CD-ROM), 2018 343‐344, Sep 3, 2018  
  • 間田潤, 松家敬介, 由良文孝, 栗原裕基, 時弘哲治
    日本応用数理学会論文誌(Web), 26(1) 105‐123(J‐STAGE)-123, 2016  Peer-reviewed
    Abstract. We investigate a simple mathematical model for angiogenesis. From recent time-lapse imaging experiments on the dynamics of endothelial cells (ECs) in angiogenesis, we suppose that elongation and bifurcation of neogenetic vessel is determined by only the density of ECs near the tip, and introduce a model described by nonlinear simultaneous differential equations. We also incorporate proliferation of ECs and activation factor such as VEGF and show the exact solutions to that model and numerical simulations.
  • 間田潤, 松家敬介, 由良文孝, 時弘哲治, 時弘哲治, 時弘哲治, 栗原裕基, 栗原裕基, 栗原裕基
    日本応用数理学会年会講演予稿集(CD-ROM), 2015 ROMBUNNO.9GATSU10NICHI,09:30,C,1, Sep 2, 2015  
  • 由良 文孝
    九州大学応用力学研究所講究録, 26AO-S2 163-169, 2015  Peer-reviewed
  • YURA Fumitaka
    Transactions of the Japan Society for Industrial and Applied Mathematics, 24(4) 317-336, 2014  Peer-reviewed
    In this paper, we prove the one-soliton solutions to the solitonic dynamical system over finite fields that may be regarded as an analogue of the box-ball systems. It turns out that the one-soliton solution has a nested structure similar to fractals, and as far as we know such a system seems to be novel. Furthermore, in spite of such a complex internal structure, numerical simulations show stable propagations before and after collisions among multiple solitons with preserving their patterns.
  • 由良 文孝
    九州大学応用力学研究所研究集会講究録, 25AO-S, 2013  Peer-reviewed
  • 中島秀之, 由良文孝, 篠田孝祐
    人工知能学会全国大会論文集(CD-ROM), 27th ROMBUNNO.3I3-OS-14A-3, 2013  
  • 中島 秀之, 由良 文孝, 篠田 孝祐
    人工知能学会全国大会論文集, 2013 3I3OS14a3-3I3OS14a3, 2013  
    <p>ALife研究などで様々な創発現象を創り出すことに成功しているが,これらは意味のある現象の創発を研究者が観測により採上げて来たものである.生命システムは細胞の創発の後,これを要素としてより大きな個体の創発に成功している.複数段の創発を行うシステムの構築のためには第一段の創発を,人手を介さずに固定できる仕組みが必要である.そのドメインとしてフラクタルネットワークを使う試みについて現状と展望を述べる.</p>
  • 中島 秀之, 由良 文孝, 篠田 孝祐
    人工知能学会全国大会論文集, 27 1-4, 2013  
  • 由良 文孝
    九州大学応用力学研究所研究集会講究録, 24AO-S3 156-161, 2012  Peer-reviewed
  • 由良文孝
    日本応用数理学会年会講演予稿集(CD-ROM), 2012 61-62, 2012  
  • YURA Fumitaka
    IEICE technical report, 109(269) 39-43, Nov 4, 2009  
    The box-ball system (BBS) is an ultradiscrete system that is studied extensively. From the method and knowledge based on BBS, we define and consider novel analogs of BBS over finite fields.
  • 由良 文孝
    九州大学応用力学研究所研究集会報告書 20ME-S7, 182-187, 2008  
  • KOMATSU Takahiro, YURA Fumitaka, UWANO Yoshio, UEDA Yoshisuke
    IEICE technical report, 107(400) 11-16, Dec 13, 2007  
    This paper is devoted to a numerical simulation of a nonlinear ordinary differential equation with periodic coefficients. The equation is one of equations in the parametrically excited systems and is a model for the neutral inversion in electric transmission lines. A contribution of periodic oscillations caused by bifurcations of periodic solutions to dissipation is discussed and we show continuous bounded components are more dominant than impulse conponents in dissipative energy.
  • 数理解析研究所講究録, 1541(1541) 178-191, Apr, 2007  
  • Nobe Atsushi, Yura Fumitaka
    Meeting Abstracts of the Physical Society of Japan, 62 238, 2007  
  • Yura Fumitaka
    数理解析研究所講究録, 1473(1473) 21-40, Feb, 2006  
  • Jun Hasegawa, Fumitaka Yura
    Mar 25, 2005  
    In this paper, we analyze the quantum counting under the decoherence, which<br /> can find the number of solutions satisfying a given oracle. We investigate<br /> probability distributions related to the first order term of the error rate on<br /> the quantum counting with the depolarizing channel. We also implement two<br /> circuits for the quantum counting -- the ascending-order circuit and the<br /> descending-order circuit -- by reversing ordering of application of<br /> controlled-Grover operations. By theoretical and numerical calculations for<br /> probability distributions, we reveal the difference of probability<br /> distributions on two circuits in the presence of decoherence and show that the<br /> ascending-order circuit is more robust against the decoherence than the<br /> descending-order circuit. This property of the robustness is applicable to the<br /> phase estimation such as the factoring.
  • 由良文孝
    数理科学, 42(6) 25-30, Jun 1, 2004  
  • 数理科学, 42(6) 25-30, Jun, 2004  
  • Hasegawa Jun, Yura Fumitaka
    Meeting Abstracts of the Physical Society of Japan, 59 175, 2004  
  • YAMADA Takashi, NIWA Jumpei, YURA Fumitaka, IMAI Hiroshi
    IPSJ SIG Notes, 2003(53) 17-24, May 23, 2003  
    We implement the quantum order-finding circuit for integer factorizing introduced by Beauregard and the existing ones on Quantum Computer Simulation System (QCSS), and do simulation on the scalable distributed-memory parallel computer. The quantum circuit by Beauregard uses 2L+3 qubits to factorize an arbitrary L-bit number. By using this circuit we can implement the whole quantum circuit on the simulator. On this environment we confirm that we can factorize up to 12-bit numbers. In addition, we examine effect of parallelization and investigate the robustness of the circuits for decoherence and operational errors. Moreover, we discuss from the experimental results the applicability of approximate QFT (AQFT) to Beauregard&#039;s circuit.
  • HASEGAWA Jun, NIWA Jumpei, YURA Fumitaka, IMAI Hiroshi
    IPSJ SIG Notes, 2003(53) 41-48, May 23, 2003  
    It is important to calculate numerical integrals in science and engineering. There is a quantum summation algorithm to calculate these fast on a quantum computer. This algorithm is exponentially faster than the best known classical deterministic algorithms and quadratically faster than the best known classical probabilistic algorithms. Thus, there have been many studies of the quantum summation algorithm. However, these studies have focused on analyzing the complexity of the algorithm and no one has investigated the actual behaviors of this algorithm by a quantum computational simulator. In this paper, we estimated the robustness for decoherence errors of this quantum summation circuits. Moreover, we constructed quantum summation circuits robust for decoherence error by improving circuits, showed the difference of the behaviors in the presence of decoherence errors between on the existing circuits and on the improved circuits, and evaluated the usefulness of our improved quantum summation circuits.
  • 八森 正泰, 由良 文孝
    オペレーションズ・リサーチ : 経営の科学 = [O]perations research as a management science [r]esearch, 47(7) 453-458, Jul 1, 2002  
  • 由良 文孝
    電子情報通信学会総合大会講演論文集, 2002(1), Mar 7, 2002  Invited
  • Yura Fumitaka, Hanamura Eiichi
    Meeting Abstracts of the Physical Society of Japan, 52, 1997  
  • Yura Fumitaka
    Meeting Abstracts of the Physical Society of Japan, 52, 1997  
  • E. HANAMURA, J. INOUE, F. YURA
    Journal of Nonlinear Optical Physics &amp; Materials, 04(01) 13-25, Jan, 1995  Peer-reviewed
    After reviewing the important roles of excitons in nonlinear optical responses, we demonstrate mutual and quantum-mechanical control of radiation field and excitons on the same footing in a microcavity. First we introduce dressed excitons as bosons interacting coherently and reversibly with a radiation mode in the microcavity. Although the vacuum Rabi splitting of the dressed exciton is the same as that of dressed atom, the emission spectrum under strong pumping shows quartet structure different from the triplet of dressed atom. Secondly, the population dynamics of dressed excitons, i.e., one-dimensional polaritons in the mesoscopic system is solved and the dominant distribution on a single mode is demonstrated above the critical pumping.
  • Yura Fumitaka, Hanamura Eiichi
    Meeting Abstracts of the Physical Society of Japan, 1994, 1994  
  • Yura Fumitaka, Hanamura Eiichi
    Meeting Abstracts of the Physical Society of Japan, 49, 1994  

Books and Other Publications

 4

Professional Memberships

 3

Research Projects

 6

Social Activities

 1