Vascular endothelial cells (ECs) in angiogenesis exhibit inhomogeneous collective migration called "cell mixing", in which cells change their relative positions by overtaking each other. However, how such complex EC dynamics lead to the formation of highly ordered branching structures remains largely unknown. To uncover hidden laws of integration driving angiogenic morphogenesis, we analyzed EC behaviors in an in vitro angiogenic sprouting assay using mouse aortic explants in combination with mathematical modeling. Time-lapse imaging of sprouts extended from EC sheets around tissue explants showed directional cohesive EC movements with frequent U-turns, which often coupled with tip cell overtaking. Imaging of isolated branches deprived of basal cell sheets revealed a requirement of a constant supply of immigrating cells for ECs to branch forward. Anisotropic attractive forces between neighboring cells passing each other were likely to underlie these EC motility patterns, as evidenced by an experimentally validated mathematical model. These results suggest that cohesive movements with anisotropic cell-to-cell interactions characterize the EC motility, which may drive branch elongation depending on a constant cell supply. The present findings provide novel insights into a cell motility-based understanding of angiogenic morphogenesis.
K. Matsuya, F. Yura, J. Mada, H. Kurihara, T. Tokihiro
SIAM JOURNAL ON APPLIED MATHEMATICS, 76(6) 2243-2259, 2016 Peer-reviewed
Angiogenesis is the morphogenetic phenomenon in which new blood vessels emerge from an existing vascular network and configure a new network. In consideration of recent experiments with time-lapse fluorescent imaging in which vascular endothelial cells exhibit cell-mixing behavior even at a tip of newly generated vascular networks, we propose a discrete mathematical model for the dynamics of vascular endothelial cells in angiogenic morphogenesis. The model incorporates two-body interaction between endothelial cells which induces cell-mixing behavior and length of the generating blood vessel shows temporal power-law scaling behavior. Numerical simulation of the model successfully reproduces elongation and bifurcation of blood vessels in the early stage of angiogenesis.
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 47(32), Aug, 2014 Peer-reviewedCorresponding author
We propose a solitonic dynamical system over finite fields that may be regarded as an analogue of the box-ball systems. The one-soliton solutions of the system, which have nested structures similar to fractals, are also proved. The solitonic system in this paper is described by polynomials, which seems to be novel. Furthermore, in spite of such complex internal structures, numerical simulations exhibit stable propagations before and after collisions among multiple solitons, preserving their patterns.
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 40(26) 7159-7174, Jun, 2007 Peer-reviewed
The initial value problem for a class of reversible elementary cellular automata with periodic boundaries is reduced to an initial- boundary value problem for a class of linear systems on a finite commutative ring Z(2). Moreover, a family of such linearizable cellular automata is given.
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 37(22) 5789-5804, Jun, 2004 Peer-reviewed
Reversibility of one-dimensional cellular automata with periodic boundary conditions is discussed. It is shown that there exist exactly 16 reversible elementary cellular automaton rules for infinitely many cell sizes by means of a correspondence between elementary cellular automaton and the de Bruijn graph. In addition, a sufficient condition for reversibility of three-valued and two-neighbour cellular automaton is given.
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 37(15) L167-L171, Apr, 2004 Peer-reviewed
We study the entanglement cost of the states in the antisymmetric space, which consists of (d - 1) d-dimensional systems. The cost is always 1092(d - 1) ebits when the state is divided into bipartite C-d circle times (C-d)(d-2). Combined with the arguments in [6], additivity of channel capacity of some quantum channels is also shown.
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 36(1) 99-121, Jan, 2003 Peer-reviewed
We investigate a box-ball system with periodic boundary conditions. Since the box-ball system is a deterministic dynamical system that takes only a finite number of states, it will exhibit periodic motion. We determine its fundamental cycle for a given initial state.
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 35(16) 3787-3801, Apr, 2002 Peer-reviewed
We propose a box and ball system with a periodic boundary condition periodic box and ball system (pBBS). The time evolution rule of the pBBS is represented as a Boolean recurrence formula, an inverse ultradiscretization of which is shown to be equivalent to the algorithm of the calculus for the 2Nth root. The relations to the pBBS of the combinatorial R matrix of U-q' (A(N)((1))) are also discussed.
Journal of Nonlinear Optical Physics & Materials, 04(01) 13-25, Jan, 1995 Peer-reviewed
After reviewing the important roles of excitons in nonlinear optical responses, we demonstrate mutual and quantum-mechanical control of radiation field and excitons on the same footing in a microcavity. First we introduce dressed excitons as bosons interacting coherently and reversibly with a radiation mode in the microcavity. Although the vacuum Rabi splitting of the dressed exciton is the same as that of dressed atom, the emission spectrum under strong pumping shows quartet structure different from the triplet of dressed atom. Secondly, the population dynamics of dressed excitons, i.e., one-dimensional polaritons in the mesoscopic system is solved and the dominant distribution on a single mode is demonstrated above the critical pumping.
Tatsuya Hayashi, Fumitaka Yura, Jun Mada, Hiroki Kurihara, Tetsuji Tokihiro
Journal of Theoretical Biology, 555 111300-111300, Dec, 2022
A two-dimensional mathematical model for dynamics of endothelial cells in
angiogenesis is investigated. Angiogenesis is a morphogenic process in which
new blood vessels emerge from an existing vascular network. Recently a
one-dimensional discrete dynamical model has been proposed to reproduce
elongation, bifurcation, and cell motility such as cell-mixing during
angiogenesis on the assumption of a simple two-body interaction between
endothelial cells. The present model is its two-dimensional extension, where
endothelial cells are represented as the ellipses with the two-body
interactions: repulsive interaction due to excluded volume effect, attractive
interaction through pseudopodia and rotation by contact. We show that the
oblateness of ellipses and the magnitude of contact rotation significantly
affect the shape of created vascular patterns and elongation of branches.
Abstract. We investigate a simple mathematical model for angiogenesis. From recent time-lapse imaging experiments on the dynamics of endothelial cells (ECs) in angiogenesis, we suppose that elongation and bifurcation of neogenetic vessel is determined by only the density of ECs near the tip, and introduce a model described by nonlinear simultaneous differential equations. We also incorporate proliferation of ECs and activation factor such as VEGF and show the exact solutions to that model and numerical simulations.
Transactions of the Japan Society for Industrial and Applied Mathematics, 24(4) 317-336, 2014 Peer-reviewed
In this paper, we prove the one-soliton solutions to the solitonic dynamical system over finite fields that may be regarded as an analogue of the box-ball systems. It turns out that the one-soliton solution has a nested structure similar to fractals, and as far as we know such a system seems to be novel. Furthermore, in spite of such a complex internal structure, numerical simulations show stable propagations before and after collisions among multiple solitons with preserving their patterns.
IEICE technical report, 109(269) 39-43, Nov 4, 2009
The box-ball system (BBS) is an ultradiscrete system that is studied extensively. From the method and knowledge based on BBS, we define and consider novel analogs of BBS over finite fields.
KOMATSU Takahiro, YURA Fumitaka, UWANO Yoshio, UEDA Yoshisuke
IEICE technical report, 107(400) 11-16, Dec 13, 2007
This paper is devoted to a numerical simulation of a nonlinear ordinary differential equation with periodic coefficients. The equation is one of equations in the parametrically excited systems and is a model for the neutral inversion in electric transmission lines. A contribution of periodic oscillations caused by bifurcations of periodic solutions to dissipation is discussed and we show continuous bounded components are more dominant than impulse conponents in dissipative energy.
In this paper, we analyze the quantum counting under the decoherence, which<br />
can find the number of solutions satisfying a given oracle. We investigate<br />
probability distributions related to the first order term of the error rate on<br />
the quantum counting with the depolarizing channel. We also implement two<br />
circuits for the quantum counting -- the ascending-order circuit and the<br />
descending-order circuit -- by reversing ordering of application of<br />
controlled-Grover operations. By theoretical and numerical calculations for<br />
probability distributions, we reveal the difference of probability<br />
distributions on two circuits in the presence of decoherence and show that the<br />
ascending-order circuit is more robust against the decoherence than the<br />
descending-order circuit. This property of the robustness is applicable to the<br />
phase estimation such as the factoring.
YAMADA Takashi, NIWA Jumpei, YURA Fumitaka, IMAI Hiroshi
IPSJ SIG Notes, 2003(53) 17-24, May 23, 2003
We implement the quantum order-finding circuit for integer factorizing introduced by Beauregard and the existing ones on Quantum Computer Simulation System (QCSS), and do simulation on the scalable distributed-memory parallel computer. The quantum circuit by Beauregard uses 2L+3 qubits to factorize an arbitrary L-bit number. By using this circuit we can implement the whole quantum circuit on the simulator. On this environment we confirm that we can factorize up to 12-bit numbers. In addition, we examine effect of parallelization and investigate the robustness of the circuits for decoherence and operational errors. Moreover, we discuss from the experimental results the applicability of approximate QFT (AQFT) to Beauregard's circuit.
HASEGAWA Jun, NIWA Jumpei, YURA Fumitaka, IMAI Hiroshi
IPSJ SIG Notes, 2003(53) 41-48, May 23, 2003
It is important to calculate numerical integrals in science and engineering. There is a quantum summation algorithm to calculate these fast on a quantum computer. This algorithm is exponentially faster than the best known classical deterministic algorithms and quadratically faster than the best known classical probabilistic algorithms. Thus, there have been many studies of the quantum summation algorithm. However, these studies have focused on analyzing the complexity of the algorithm and no one has investigated the actual behaviors of this algorithm by a quantum computational simulator. In this paper, we estimated the robustness for decoherence errors of this quantum summation circuits. Moreover, we constructed quantum summation circuits robust for decoherence error by improving circuits, showed the difference of the behaviors in the presence of decoherence errors between on the existing circuits and on the improved circuits, and evaluated the usefulness of our improved quantum summation circuits.
Journal of Nonlinear Optical Physics & Materials, 04(01) 13-25, Jan, 1995 Peer-reviewed
After reviewing the important roles of excitons in nonlinear optical responses, we demonstrate mutual and quantum-mechanical control of radiation field and excitons on the same footing in a microcavity. First we introduce dressed excitons as bosons interacting coherently and reversibly with a radiation mode in the microcavity. Although the vacuum Rabi splitting of the dressed exciton is the same as that of dressed atom, the emission spectrum under strong pumping shows quartet structure different from the triplet of dressed atom. Secondly, the population dynamics of dressed excitons, i.e., one-dimensional polaritons in the mesoscopic system is solved and the dominant distribution on a single mode is demonstrated above the critical pumping.