Curriculum Vitaes

Tomomi Komura

  (小村 智美)

Profile Information

Affiliation
School of Human Science and Environment, University of Hyogo
Degree
学術博士(大阪市立大学)

Researcher number
10736515
J-GLOBAL ID
201601000482165366
researchmap Member ID
B000256325

External link

Papers

 18
  • Tomomi Komura, Masaru Yoshida, Yoshikazu Nishikawa
    Exploration of Neuroscience, 3 80-102, Apr 7, 2024  Peer-reviewedInvitedLead authorCorresponding author
  • Tomomi Komura, Motoshi Aoki, Yoshikazu Nishikawa
    Letters in Applied Microbiology, Feb 22, 2024  Peer-reviewedLead authorCorresponding author
    Abstract Lactic acid bacteria (LAB) contribute to human health, and LAB functionality has been studied using Caenorhabditis elegans as an alternative host. However, many studies have focused on the efficacy of a single strain of LAB, and few reports have compared various LAB strains. In this study, we examined the effects of 15 strains of LAB isolated from vegetables, meat, and fermented foods on nematode longevity and healthy lifespan. To reduce the frequency of laborious survival observations, we performed a lifespan assay on agar plates containing 2′-deoxy-5-fluorouridine (FUdR), which inhibits egg-hatching and prevents generation mixing. Four beneficial strains showed significant lifespan extension and increased spontaneous nematode mobility, regardless of treatment with or without FUdR and the frequency of survival observation. These results suggested increased longevity and an extended healthy lifespan, which confirming the reliability of our method. The four strains are expected to show anti-ageing effects besides longevity and have effects on age-related degenerative diseases. Our labour-saving method can be used as an alternative to conventional methods and enable simultaneous screening of multiple strains. Future research could explore factors contributing to lifespan regulation by comparing and verifying differential strain effects on lifespan.
  • Tomomi Komura, Motoshi Aoki, Satoshi Kotoura, Yoshikazu Nishikawa
    Biomedicine&Pharmacotherapy, 155 113769, Nov, 2022  Peer-reviewedLead authorCorresponding author
  • Tomomi Komura, Asami Takemoto, Hideki Kosaka, Toshio Suzuki, Yoshikazu Nishikawa
    MICROBIOLOGY SPECTRUM, 10(3) e0045421, May 16, 2022  Peer-reviewedLead author
    Lactic acid bacteria are beneficial to Caenorhabditis elegans; however, bacteria acting as probiotics in nematodes may not necessarily have probiotic functions in humans. Lactococcus cremoris subsp. cremoris reportedly has probiotic functions in humans. Therefore, we determined whether the strain FC could exert probiotic effects in C. elegans in terms of improving host defenses and extending life span. Live FC successfully extended the life span and enhanced host defense compared to Escherichia coli OP50 (OP50), a standard food source for C. elegans. The FC-fed worms were tolerant to Salmonella enterica subsp. enterica serovar Enteritidis or Staphylococcus aureus infection and had better survival than the OP50-fed control worms. Further, the chemotaxis index, an indicator of perception ability, was more stable and significantly higher in FC-fed worms than in the control worms. The increase in autofluorescence from advanced glycation end products (AGEs) with aging was also ameliorated in FC-fed worms. FC showed beneficial effects in daf-16 and pmk-1 mutants, but not in skn-1 mutants. Since SKN-1 is the C. elegans ortholog of Nrf2, we measured the transcription of heme oxygenase-1 (HO-1), which is regulated by Nrf2, in murine macrophages and found that HO-1 mRNA expression was increased >5 times by inoculation with FC cells. Thus, FC could exert antisenescence effects via the SKN-1/Nrf2 pathway. This study showed for the first time that FC supported perceptive function and suppressed AGEs in nematodes as probiotic bacteria. Therefore, C. elegans can be an alternative model to screen for probiotic bacteria that can be used for antisenescence effects in humans. IMPORTANCE Aging is one of our greatest challenges. The World Health Organization proposed that "active aging" might encourage people to continue to work according to their capacities and preferences as they grow old and would prevent or delay disabilities and chronic diseases that are costly to both individuals and the society, considering that disease prevention is more economical than treatment. Probiotic bacteria, such as lactobacilli, are live microorganisms that exert beneficial effects on human health when ingested in sufficient amounts and can promote longevity. The significance of this study is that it revealed the antisenescence and various beneficial effects of the representative probiotic bacterium Lactococcus cremoris subsp. cremoris strain FC exerted via the SKN-1/Nrf2 pathway in the nematode Caenorhabditis elegans.Aging is one of our greatest challenges. The World Health Organization proposed that "active aging" might encourage people to continue to work according to their capacities and preferences as they grow old and would prevent or delay disabilities and chronic diseases that are costly to both individuals and the society, considering that disease prevention is more economical than treatment.
  • Ayano Tsuru, Yumi Hamazaki, Shuta Tomida, Mohammad Shaokat Ali, Tomomi Komura, Yoshikazu Nishikawa, Eriko Kage-Nakadai
    Microbiology Spectrum, 9(2) e0056221, Oct 27, 2021  Peer-reviewed
    <named-content content-type="genus-species">Cutibacterium acnes</named-content> is one of the most common bacterial species residing on the human skin. Although the pathogenic properties of <named-content content-type="genus-species">C. acnes</named-content> , such as its association with acne vulgaris, have been widely described, its beneficial aspects have not been well characterized.
  • Tomomi Komura, Mikihiro Yamanaka, Kohji Nishimura, Keita Hara, Yoshikazu Nishikawa
    npj Aging and Mechanisms of Disease, 7(1) 12-12, Jun 7, 2021  Peer-reviewedLead author
    <title>Abstract</title>To assess the utility of autofluorescence as a noninvasive biomarker of senescence in <italic>Caenorhabditis elegans</italic>, we measured the autofluorescence of individual nematodes using spectrofluorometry. The fluorescence of each worm increased with age. Animals with lower fluorescence intensity exhibited longer life expectancy. When proteins extracted from worms were incubated with sugars, the fluorescence intensity and the concentration of advanced glycation end products (AGEs) increased over time. Ribose enhanced these changes not only in vitro but also in vivo. The glycation blocker rifampicin suppressed this rise in fluorescence. High-resolution mass spectrometry revealed that vitellogenins accumulated in old worms, and glycated vitellogenins emitted six-fold higher fluorescence than naive vitellogenins. The increase in fluorescence with ageing originates from glycated substances, and therefore could serve as a useful noninvasive biomarker of AGEs. <italic>C. elegans</italic> can serve as a new model to look for anti-AGE factors and to study the relationship between AGEs and senescence.
  • Tomomi Komura, Asami Takemoto, Hideki Kosaka, Toshio Suzuki, Yoshikazu Nishikawa
    Apr 14, 2021  Lead author
    <title>ABSTRACT</title>This study evaluated whether the lactic acid bacteria <italic>Lactococcus lactis</italic> subsp. <italic>cremoris</italic> strain FC (FC) could ameliorate host defenses and cognitive ability and extend the lifespan of <italic>Caenorhabditis elegans</italic>, a model of senescence. The lifespan and resistance to physical, chemical, and biological stressors were compared between <italic>C. elegans</italic> fed FC and those fed <italic>Escherichia coli</italic> OP50 (OP), an international standard food for <italic>C. elegans</italic>. Living FC successfully extended the health span, enhanced host defense, and ameliorated the cognitive ability of the nematodes; even the exopolysaccharides (EPSes) of FC could extend the lifespan of <italic>C. elegans</italic>. The chemotaxis index, which was used to evaluate the senescence of sensory neurons, tended to decrease with aging; however, it was more stable in worms fed FC and was significantly higher than that of the control worms at 7 days of age. The worms fed FC were tolerant to <italic>Salmonella enterica</italic> serovar Enteritidis or <italic>Staphylococcus aureus</italic> infection and had better survival than the control worms fed OP. FC showed beneficial effects in <italic>C. elegans daf-16</italic> and <italic>pmk-1</italic> mutants, but not in <italic>skn-1</italic> mutants. Since SKN-1 is the <italic>C. elegans</italic> ortholog of Nrf2, we measured the transcription of heme oxygenase-1 (HO-1), which is regulated by Nrf2, in murine macrophages and found that HO-1 mRNA expression was increased &gt;5 times by inoculation with either FC cells or heat-killed bacteria with EPSes. Thus, both FC and the EPSes can affect longevity <italic>via</italic> the SKN-1/Nrf2 pathway in both nematodes and mammalian cells. <sec><title>IMPORTANCE</title>Ageing is one of our greatest challenges. The World Health Organization proposed the concept of “Active Ageing” might encourage people to continue to work according to their capacities and preferences as they grow old and would prevent or delay disabilities and chronic diseases that are costly to both individuals and the society, considering that disease prevention is more economical than treatment. Probiotic bacteria such as lactobacilli are living microorganisms that exert beneficial effects on human health when ingested in sufficient amounts and can promote longevity. The significance of this study is that it revealed the anti-senescence and various beneficial effects of the probiotic representative bacterium <italic>Lactococcus lactis</italic> subsp. <italic>cremoris</italic> strain FC and its exopolysaccharides in the nematode <italic>Caenorhabditis elegans</italic>. </sec>
  • Sun S, Mizuno Y, Komura T, Nishikawa Y, Kage-Nakadai E
    Bioscience of Microbiota, Food and Health, 38(3) 105-110, May, 2019  Peer-reviewed
    Bifidobacterium infantis, a Gram-positive bacterium, is one of the commonly used probiotics. We previously showed that B. infantis modified host defense systems and extended the lifespan of the nematode Caenorhabditis elegans. In the present study, we showed that the lifespan extension caused by B. infantis was enhanced in animals having a mutation in the tol-1 gene that encodes the sole C. elegans homolog of Toll-like receptors (TLRs). Meanwhile, lifespan increased by other probiotic bacteria, such as Bacillus subtilis or Clostridium butyricum, was not affected in the tol-1 mutant animals. A microarray analysis revealed that the expression of innate immune response-related genes was significantly increased in the tol-1 mutant. Worms with the tol-1 mutation exhibited reduced leaving behavior from the B. infantis lawn, while canonical downstream factors trf-1/TRAF and ikb-1/IκB appeared to not be involved. In conclusion, C. elegans tol-1/TLR regulates B. infantis-induced longevity and also regulates behavior against B. infantis.
  • 小村 智美
    日本食品微生物学会雑誌, 36(1) 28-31, Mar, 2019  InvitedLead authorCorresponding author
  • Yumiko Nakatani, Yukie Yaguchi, Tomomi Komura, Masakazu Nakadai, Kenji Terao, Eriko Kage-Nakadai, Yoshikazu Nishikawa
    European Journal of Nutrition, 57(3) 1137-1146, Apr 1, 2018  Peer-reviewed
    Purpose: Sesamin, a polyphenolic compound found in sesame seeds, has been reported to exert a variety of beneficial health effects. We have previously reported that sesamin increases the lifespan of Caenorhabditis elegans. In this study, we investigated the molecular mechanisms underlying the longevity effect of sesamin in C. elegans. Methods: Starting from three days of age, Caenorhabditis elegans animals were fed a standard diet alone or supplemented with sesamin. A C. elegans genome array was used to perform a comprehensive expression analysis. Genes that showed differential expression were validated using real-time PCR. Mutant or RNAi-treated animals were fed sesamin, and the lifespan was determined to identify the genes involved in the longevity effects of sesamin. Results: The microarray analysis revealed that endoplasmic reticulum unfolded protein response-related genes, which have been reported to show decreased expression under conditions of SIR-2.1/Sirtuin 1 (SIRT1) overexpression, were downregulated in animals supplemented with sesamin. Sesamin failed to extend the lifespan of sir-2.1 knockdown animals and of sir-2.1 loss-of-function mutants. Sesamin was also ineffective in bec-1 RNAi-treated animals bec-1 is a key regulator of autophagy, and is necessary for longevity induced by sir-2.1 overexpression. Furthermore, the heterozygotic mutation of daf-15, which encodes the target of rapamycin (TOR)-binding partner Raptor, abolished lifespan extension by sesamin. Moreover, sesamin did not prolong the lifespan of loss-of-function mutants of aak-2, which encodes the AMP-activated protein kinase (AMPK). Conclusions: Sesamin extends the lifespan of C. elegans through several dietary restriction-related signaling pathways, including processes requiring SIRT1, TOR, and AMPK.
  • Jeffrey J. Coleman, Tomomi Komura, Julia Munro, Michael P. Wu, Rakhee R. Busanelli, Angela N. Koehler, Meryl Thomas, Florence F. Wagner, Edward B. Holson, Eleftherios Mylonakis
    FUTURE MEDICINAL CHEMISTRY, 8(17) 2033-2046, Nov, 2016  Peer-reviewed
    Aim: Caffeic acid (3,4-dihydroxycinnamic acid) phenethyl ester (CAPE), the major constituent of propolis, is able to increase the survival of the nematode Caenorhabditis elegans after infection with the fungal pathogen Candida albicans. Results: CAPE increases the expression of several antimicrobial proteins involved in the immune response to C. albicans. Structural derivatives of CAPE were synthesized to identify structure-activity relationships and decrease metabolic liability, ultimately leading to a compound that has similar efficacy, but increased in vivo stability. The CED-10(Rac-1)/PAK1 pathway was essential for immunomodulation by CAPE and was a critical component involved in the immune response to fungal pathogens. Conclusion: Caenorhabditis elegans is an efficient heterologous host to evaluate immunomodulatory compounds and identify components of the pathway(s) involved in the mode of action of compounds.
  • Yukie Yaguchi, Tomomi Komura, Noriko Kashima, Miho Tamura, Eriko Kage-Nakadai, Shigeru Saeki, Keiji Terao, Yoshikazu Nishikawa
    EUROPEAN JOURNAL OF NUTRITION, 53(8) 1659-1668, Dec, 2014  Peer-reviewed
    Nutritional control has been proposed as a potential therapy for slowing the senescence of immune function and decreasing mortality. This study investigated whether sesamin could modify host defense systems and extend the lifespan of the nematode Caenorhabditis elegans. Nematodes were fed standard food (the bacterium Escherichia coli strain OP50) supplemented with various doses of sesamin/gamma-cyclodextrin inclusion compounds starting from young adulthood. The mean lifespan, muscle function, lipofuscin accumulation, protein carbonyl content, and stress resistance of the worms were examined. Then, C. elegans mutants harboring loss-of-function lesions in longevity- and host defense-related signaling pathways were supplemented with sesamin to identify the genes involved in the longevity effects. Worms supplemented with sesamin displayed higher locomotion and prolongevity and produced offspring at levels similar to unsupplemented control animals. The growth curves of nematodes were similar to those of controls, suggesting that sesamin did not induce prolongevity effects through dietary restriction. Notably, sesamin made the worms more resistant to infection by Legionella pneumophila and more resistant to oxidative stressors such as paraquat and hydrogen peroxide and prolonged the lifespan of a mev-1 mutant that produces abundant superoxide anions. However, the accumulation of protein carbonyls and lipofuscin was similar in sesamin-exposed and control worms, suggesting that sesamin is unlikely to work simply as an antioxidant. Sesamin supplementation failed to extend the lifespan of loss-of-function mutants of daf-2, daf-16, pmk-1, and skn-1. Sesamin enhances the host defense of C. elegans and increases the average lifespan via activation of both skn-1 (encoding a component of the p38 MAPK pathway) and daf-16 (encoding a component of the IGF-1 pathway).
  • KOMURA Tomomi, NISHIKAWA Yoshikazu
    Japanese Journal of Food Microbiology, 30(1) 1-14, Mar, 2013  Peer-reviewedLead author
  • Tomomi Komura, Takanori Ikeda, Chikako Yasui, Shigeru Saeki, Yoshikazu Nishikawa
    BIOGERONTOLOGY, 14(1) 73-87, Feb, 2013  Peer-reviewedLead author
    Lactobacilli and bifidobacteria are probiotic bacteria that modify host defense systems and have the ability to extend the lifespan of the nematode Caenorhabditis elegans. Here, we attempted to elucidate the mechanism by which bifidobacteria prolong the lifespan of C. elegans. When the nematode was fed Bifidobacterium infantis (BI) mixed at various ratios with the standard food bacterium Escherichia coli strain OP50 (OP), the mean lifespan of worms was extended in a dose-dependent manner. Worms fed BI displayed higher locomotion and produced more offspring than control worms. The growth curves of nematodes were similar regardless of the amount of BI mixed with OP, suggesting that BI did not induce prolongevity effects through caloric restriction. Notably, feeding worms the cell wall fraction of BI alone was sufficient to promote prolongevity. The accumulation of protein carbonyls and lipofuscin, a biochemical marker of aging, was also lower in worms fed BI; however, the worms displayed similar susceptibility to heat, hydrogen peroxide, and paraquat, an inducer of free radicals, as the control worms. As a result of BI feeding, loss-of-function mutants of daf-16, jnk-1, aak-2, tol-1, and tir-1 exhibited a longer lifespan than OP-fed control worms, but BI failed to extend the lifespan of pmk-1, skn-1, and vhp-1 mutants. As skn-1 induces phase 2 detoxification enzymes, our findings suggest that cell wall components of bifidobacteria increase the average lifespan of C. elegans via activation of skn-1, regulated by the p38 MAPK pathway, but not by general activation of the host defense system via DAF-16.
  • Noriko Kashima, Yukiko Fujikura, Tomomi Komura, Shogo Fujiwara, Miyuki Sakamoto, Keiji Terao, Yoshikazu Nishikawa
    BIOGERONTOLOGY, 13(3) 337-344, Jun, 2012  Peer-reviewed
    Methods for quantitative oral administration of various substances to Caenorhabditis elegans are needed. Previously, we succeeded in oral administration of hydrophilic substances using liposomes. However, an adequate system for delivery of hydrophobic chemicals was not available. In this study, we developed a method for oral administration of lipid-soluble substances to C. elegans. gamma-cyclodextrin (gamma CD), which delivers hydrophobic chemicals, was used to make micro-particles of inclusion compounds that can be ingested by bacteriophagous nematodes, which do not distinguish these micro-particles from their food bacteria. Successful oral delivery of the hydrophobic fluorescent reagent 3,3'-dioctadecyloxacarbocyanine perchlorate into the intestines of C. elegans was observed. Oral administration of the hydrophobic antioxidants tocotrienol, astaxanthin, or gamma-tocopherol, prolonged the nematode lifespan; tocotrienol rendered them resistant to infection with the opportunistic pathogen Legionella pneumophila. In contrast, older conventional delivery methods that involve incorporation of chemicals into the nematode growth medium or pouring chemicals onto the plate produced weaker fluorescence and no longevity effects. Our method efficiently and quantitatively delivers hydrophobic solutes to nematodes, and a minimum effective dose was estimated. In combination with our liposome method, this gamma CD method expands the usefulness of C. elegans for the discovery of functional food factors and for screening drug candidates.
  • Noriko Kashima, Yukiko Fujikura, Tomomi Komura, Keiji Terao, Barrie Tan, Yoshikazu Nishikawa
    Tocotrienols: Vitamin E beyond Tocopherols, Second Edition, 279-290, Jan, 2012  
    © 2013 by American Oil Chemists Society. The legend of “The Fountain of Youth” shows that rejuvenation, as well as anti-senescence that slows down the processes of aging to extend the maximum and mean lifespan, has been a human desire probably since humans first appeared on this planet (Gruman, 2003). Several theories have been proposed to explain the mechanism of senescence such as the mutation accumulation theory (Medawar, 1952), the antagonistic pleiotropy theory (Williams, 1957), and the disposable soma theory (Kirkwood and Holliday, 1979). Among such theories, the free radical theory is considered a convincing theory (Harman, 2003). Free radicals, for example, singlet oxygen, hydrogen peroxide, and hydroxide radicals that are produced during oxygen metabolism react with the polyunsaturated fatty acid residues of plasma membranes. Such interaction with the membrane results in oxidative damage to subcellular organelles that is of particular significance for lysosomes, mitochondria, and the nuclear envelope (Goldstein et al., 1993).
  • Tomomi Komura, Takanori Ikeda, Kaori Hoshino, Ayumi Shibamura, Yoshikazu Nishikawa
    RECENT ADVANCES ON MODEL HOSTS, 710 19-27, 2012  Peer-reviewedLead author
    Whether nutritional control can retard senescence of immune function and decrease mortality from infectious diseases has not yet been established; the difficulty of establishing a model has made this a challenging topic to investigate. Caenorhabditis elegans has been extensively used as an experimental system for biological studies. Particularly for aging studies, the worm has the advantage of a short and reproducible life span. The organism has also been recognized as an alternative to mammalian models of infection with bacterial pathogens in this decade. Hence we have studied whether the worms could be a model host in the fields of immunosenescence and immunonutrition. Feeding nematodes lactic acid bacteria (LAB) resulted in increases in average life span of the nematodes compared to those fed Escherichia coli strain OP50, a standard food bacteria. The 7-day-old nematodes fed LAN from age 3 days were clearly endurable to subsequent salmonella infection compared with nematodes fed OP50 before the salmonella infection. The worm could be a unique model to study effects of food factors on longevity and host defense, so-called immunonutrition. Then we attempted to establish an immunosenescence model using C. elegans. We focused on the effects of worm age on the Legionella infection and the prevention by immunonutrition. No significant differences in survival were seen between 3-day-old worms fed OP50 and 3-day-old worms infected with virulent Legionella strains. However, when the worms were infected from 7.5 days after hatching, the virulent Legionella strains were obviously nematocidal for the worms' immunosenescence. In contrast, nematodes fed with bifidobacteria prior to Legionella infection were resistant to Legionella. C. elegans could act as a unique alternative host for immunosenescence and resultant opportunistic infection, and immunonutrition researches.
  • Tomomi Komura, Chikako Yasui, Hiroshi Miyamoto, Yoshikazu Nishikawa
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(12) 4105-4108, Jun, 2010  Peer-reviewedLead author
    The survival times of Caenorhabditis elegans worms infected with Legionella pneumophila from day 7.5 or later after hatching were shorter than those of uninfected worms. However, nematodes fed bifidobacteria prior to Legionella infection were resistant to Legionella. These nematodes may act as a unique alternative host for Legionella research.

Books and Other Publications

 5

Presentations

 66

Research Projects

 22